Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1101

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1099 and GFF1100 are separated by 100 nucleotidesGFF1100 and GFF1101 are separated by 4 nucleotidesGFF1101 and GFF1102 are separated by 0 nucleotides GFF1099 - type 1 fimbriae major subunit FimA, at 285,253 to 285,795 GFF1099 GFF1100 - chaperone FimC, at 285,896 to 286,582 GFF1100 GFF1101 - type 1 fimbriae anchoring protein FimD, at 286,587 to 289,208 GFF1101 GFF1102 - Fimbriae-like adhesin SfmH, at 289,209 to 290,216 GFF1102 Position (kb) 286 287 288 289 290Strain fitness (log2 ratio) -1 0 1at 285.623 kb on + strand, within GFF1099at 285.624 kb on - strand, within GFF1099at 285.887 kb on - strandat 285.890 kb on - strandat 286.166 kb on - strand, within GFF1100at 286.177 kb on + strand, within GFF1100at 286.306 kb on + strand, within GFF1100at 286.312 kb on - strand, within GFF1100at 286.419 kb on - strand, within GFF1100at 286.439 kb on + strand, within GFF1100at 286.439 kb on + strand, within GFF1100at 286.469 kb on - strand, within GFF1100at 286.587 kb on - strandat 286.699 kb on - strandat 286.786 kb on - strandat 286.800 kb on + strandat 286.812 kb on - strandat 286.925 kb on + strand, within GFF1101at 287.052 kb on - strand, within GFF1101at 287.091 kb on + strand, within GFF1101at 287.092 kb on - strand, within GFF1101at 287.092 kb on - strand, within GFF1101at 287.219 kb on + strand, within GFF1101at 287.319 kb on - strand, within GFF1101at 287.322 kb on + strand, within GFF1101at 287.373 kb on - strand, within GFF1101at 287.373 kb on - strand, within GFF1101at 287.376 kb on + strand, within GFF1101at 287.376 kb on + strand, within GFF1101at 287.376 kb on + strand, within GFF1101at 287.376 kb on + strand, within GFF1101at 287.377 kb on - strand, within GFF1101at 287.379 kb on - strand, within GFF1101at 287.420 kb on - strand, within GFF1101at 287.441 kb on + strand, within GFF1101at 287.441 kb on + strand, within GFF1101at 287.442 kb on - strand, within GFF1101at 287.442 kb on - strand, within GFF1101at 287.530 kb on - strand, within GFF1101at 287.570 kb on + strand, within GFF1101at 287.571 kb on - strand, within GFF1101at 287.573 kb on + strand, within GFF1101at 287.574 kb on - strand, within GFF1101at 287.588 kb on + strand, within GFF1101at 287.640 kb on - strand, within GFF1101at 287.651 kb on + strand, within GFF1101at 287.680 kb on + strand, within GFF1101at 287.738 kb on + strand, within GFF1101at 287.801 kb on + strand, within GFF1101at 287.916 kb on - strand, within GFF1101at 288.129 kb on + strand, within GFF1101at 288.133 kb on - strand, within GFF1101at 288.187 kb on + strand, within GFF1101at 288.312 kb on + strand, within GFF1101at 288.432 kb on + strand, within GFF1101at 288.452 kb on + strand, within GFF1101at 288.467 kb on + strand, within GFF1101at 288.661 kb on - strand, within GFF1101at 288.792 kb on - strand, within GFF1101at 289.392 kb on - strand, within GFF1102at 289.392 kb on - strand, within GFF1102at 289.392 kb on - strand, within GFF1102at 289.441 kb on - strand, within GFF1102at 289.450 kb on - strand, within GFF1102at 289.450 kb on - strand, within GFF1102at 289.450 kb on - strand, within GFF1102at 289.450 kb on - strand, within GFF1102at 289.494 kb on + strand, within GFF1102at 289.515 kb on + strand, within GFF1102at 289.706 kb on + strand, within GFF1102at 289.707 kb on - strand, within GFF1102at 289.712 kb on + strand, within GFF1102at 289.712 kb on + strand, within GFF1102at 289.719 kb on + strand, within GFF1102at 289.761 kb on + strand, within GFF1102at 289.775 kb on + strand, within GFF1102at 290.094 kb on - strand, within GFF1102at 290.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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285,623 + GFF1099 0.68 -0.0
285,624 - GFF1099 0.68 +0.6
285,887 - -0.2
285,890 - +0.4
286,166 - GFF1100 0.39 -0.8
286,177 + GFF1100 0.41 +0.2
286,306 + GFF1100 0.60 +0.1
286,312 - GFF1100 0.61 +0.4
286,419 - GFF1100 0.76 -0.8
286,439 + GFF1100 0.79 +0.6
286,439 + GFF1100 0.79 -0.4
286,469 - GFF1100 0.83 +0.1
286,587 - +0.8
286,699 - +0.3
286,786 - -0.2
286,800 + -0.4
286,812 - -0.2
286,925 + GFF1101 0.13 -0.1
287,052 - GFF1101 0.18 +0.8
287,091 + GFF1101 0.19 -0.7
287,092 - GFF1101 0.19 +0.3
287,092 - GFF1101 0.19 -0.6
287,219 + GFF1101 0.24 +0.4
287,319 - GFF1101 0.28 -1.6
287,322 + GFF1101 0.28 -0.9
287,373 - GFF1101 0.30 -1.3
287,373 - GFF1101 0.30 +0.0
287,376 + GFF1101 0.30 -0.1
287,376 + GFF1101 0.30 -0.1
287,376 + GFF1101 0.30 -0.3
287,376 + GFF1101 0.30 +0.3
287,377 - GFF1101 0.30 +0.5
287,379 - GFF1101 0.30 +0.0
287,420 - GFF1101 0.32 -0.2
287,441 + GFF1101 0.33 -0.0
287,441 + GFF1101 0.33 +0.6
287,442 - GFF1101 0.33 +0.1
287,442 - GFF1101 0.33 +0.2
287,530 - GFF1101 0.36 -0.1
287,570 + GFF1101 0.37 +0.7
287,571 - GFF1101 0.38 +0.2
287,573 + GFF1101 0.38 +0.3
287,574 - GFF1101 0.38 +0.3
287,588 + GFF1101 0.38 -0.0
287,640 - GFF1101 0.40 -0.1
287,651 + GFF1101 0.41 +0.1
287,680 + GFF1101 0.42 -0.1
287,738 + GFF1101 0.44 -0.6
287,801 + GFF1101 0.46 +0.0
287,916 - GFF1101 0.51 +0.9
288,129 + GFF1101 0.59 +0.1
288,133 - GFF1101 0.59 +0.7
288,187 + GFF1101 0.61 -0.0
288,312 + GFF1101 0.66 +0.9
288,432 + GFF1101 0.70 +1.0
288,452 + GFF1101 0.71 +0.3
288,467 + GFF1101 0.72 +0.7
288,661 - GFF1101 0.79 +0.2
288,792 - GFF1101 0.84 -0.1
289,392 - GFF1102 0.18 +0.4
289,392 - GFF1102 0.18 +0.0
289,392 - GFF1102 0.18 -0.7
289,441 - GFF1102 0.23 +0.0
289,450 - GFF1102 0.24 -0.3
289,450 - GFF1102 0.24 +0.3
289,450 - GFF1102 0.24 -0.2
289,450 - GFF1102 0.24 -0.2
289,494 + GFF1102 0.28 +0.0
289,515 + GFF1102 0.30 -0.5
289,706 + GFF1102 0.49 +0.4
289,707 - GFF1102 0.49 +0.1
289,712 + GFF1102 0.50 +0.9
289,712 + GFF1102 0.50 +0.0
289,719 + GFF1102 0.51 +0.1
289,761 + GFF1102 0.55 +0.4
289,775 + GFF1102 0.56 -0.2
290,094 - GFF1102 0.88 -0.1
290,148 - +0.6

Or see this region's nucleotide sequence