Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF913 and GFF914 overlap by 4 nucleotides GFF914 and GFF915 are separated by 16 nucleotides
GFF913 - D-Glucosaminate-6-phosphate ammonia-lyase (EC 4.3.1.-), at 90,937 to 92,055
GFF913
GFF914 - 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) in D-glucosaminate utilization operon, at 92,052 to 92,792
GFF914
GFF915 - Putative BglB-family transcriptional antiterminator, at 92,809 to 94,722
GFF915
Position (kb) 92
93 Strain fitness (log2 ratio) -1
0
1 at 91.103 kb on - strand, within GFF913 at 91.227 kb on + strand, within GFF913 at 91.228 kb on - strand, within GFF913 at 91.381 kb on - strand, within GFF913 at 91.405 kb on + strand, within GFF913 at 91.405 kb on + strand, within GFF913 at 91.405 kb on + strand, within GFF913 at 91.408 kb on - strand, within GFF913 at 91.427 kb on + strand, within GFF913 at 91.480 kb on - strand, within GFF913 at 91.554 kb on + strand, within GFF913 at 91.558 kb on + strand, within GFF913 at 91.632 kb on - strand, within GFF913 at 91.752 kb on - strand, within GFF913 at 91.811 kb on + strand, within GFF913 at 91.921 kb on + strand, within GFF913 at 91.930 kb on + strand, within GFF913 at 91.931 kb on - strand, within GFF913 at 92.001 kb on - strand at 92.220 kb on + strand, within GFF914 at 92.232 kb on - strand, within GFF914 at 92.311 kb on + strand, within GFF914 at 92.482 kb on + strand, within GFF914 at 92.568 kb on + strand, within GFF914 at 92.569 kb on - strand, within GFF914 at 92.570 kb on + strand, within GFF914 at 92.571 kb on - strand, within GFF914 at 92.578 kb on + strand, within GFF914 at 92.681 kb on - strand, within GFF914 at 92.703 kb on + strand, within GFF914 at 92.706 kb on - strand, within GFF914 at 92.706 kb on - strand, within GFF914 at 92.720 kb on + strand at 92.720 kb on + strand at 92.761 kb on + strand at 92.761 kb on + strand at 93.090 kb on - strand, within GFF915 at 93.094 kb on + strand, within GFF915 at 93.095 kb on - strand, within GFF915 at 93.308 kb on + strand, within GFF915 at 93.308 kb on + strand, within GFF915 at 93.309 kb on - strand, within GFF915 at 93.351 kb on + strand, within GFF915 at 93.352 kb on - strand, within GFF915 at 93.573 kb on - strand, within GFF915 at 93.575 kb on + strand, within GFF915 at 93.614 kb on + strand, within GFF915 at 93.634 kb on - strand, within GFF915 at 93.634 kb on - strand, within GFF915
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 91,103 - GFF913 0.15 +0.2 91,227 + GFF913 0.26 +0.1 91,228 - GFF913 0.26 +0.3 91,381 - GFF913 0.40 -0.7 91,405 + GFF913 0.42 -0.2 91,405 + GFF913 0.42 -0.0 91,405 + GFF913 0.42 +0.2 91,408 - GFF913 0.42 -0.1 91,427 + GFF913 0.44 +0.2 91,480 - GFF913 0.49 -0.7 91,554 + GFF913 0.55 -0.2 91,558 + GFF913 0.55 -0.1 91,632 - GFF913 0.62 +0.2 91,752 - GFF913 0.73 +0.3 91,811 + GFF913 0.78 +0.0 91,921 + GFF913 0.88 -0.0 91,930 + GFF913 0.89 -0.2 91,931 - GFF913 0.89 +0.1 92,001 - -0.9 92,220 + GFF914 0.23 -0.1 92,232 - GFF914 0.24 +0.2 92,311 + GFF914 0.35 +0.6 92,482 + GFF914 0.58 +0.0 92,568 + GFF914 0.70 +0.1 92,569 - GFF914 0.70 -0.4 92,570 + GFF914 0.70 -1.1 92,571 - GFF914 0.70 -0.7 92,578 + GFF914 0.71 -0.1 92,681 - GFF914 0.85 -0.0 92,703 + GFF914 0.88 -0.4 92,706 - GFF914 0.88 -1.1 92,706 - GFF914 0.88 +0.3 92,720 + +0.3 92,720 + +0.2 92,761 + +0.2 92,761 + +0.3 93,090 - GFF915 0.15 +1.1 93,094 + GFF915 0.15 +0.0 93,095 - GFF915 0.15 +0.7 93,308 + GFF915 0.26 -0.1 93,308 + GFF915 0.26 -0.3 93,309 - GFF915 0.26 -0.2 93,351 + GFF915 0.28 -0.4 93,352 - GFF915 0.28 +0.0 93,573 - GFF915 0.40 -0.1 93,575 + GFF915 0.40 +0.1 93,614 + GFF915 0.42 +0.1 93,634 - GFF915 0.43 -0.3 93,634 - GFF915 0.43 -0.4
Or see this region's nucleotide sequence