Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF907 and GFF908 are separated by 10 nucleotides GFF908 and GFF909 overlap by 1 nucleotides GFF909 and GFF910 are separated by 22 nucleotides GFF910 and GFF911 are separated by 11 nucleotides GFF911 and GFF912 are separated by 58 nucleotides
GFF907 - FIG01045571: hypothetical protein, at 87,302 to 87,631
GFF907
GFF908 - FIG00628496: hypothetical protein, at 87,642 to 88,004
GFF908
GFF909 - FIG074102: hypothetical protein, at 88,004 to 88,306
GFF909
GFF910 - Putative inner membrane protein, at 88,329 to 89,105
GFF910
GFF911 - Putative inner membrane protein, at 89,117 to 89,761
GFF911
GFF912 - Metallo-dependent hydrolases, subgroup B, at 89,820 to 90,953
GFF912
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1
2 at 87.366 kb on + strand, within GFF907 at 87.469 kb on + strand, within GFF907 at 87.629 kb on + strand at 87.653 kb on + strand at 87.834 kb on - strand, within GFF908 at 87.859 kb on - strand, within GFF908 at 87.948 kb on - strand, within GFF908 at 88.038 kb on + strand, within GFF909 at 88.038 kb on + strand, within GFF909 at 88.123 kb on + strand, within GFF909 at 88.128 kb on + strand, within GFF909 at 88.128 kb on + strand, within GFF909 at 88.136 kb on - strand, within GFF909 at 88.229 kb on + strand, within GFF909 at 88.230 kb on - strand, within GFF909 at 88.343 kb on - strand at 88.448 kb on + strand, within GFF910 at 88.688 kb on - strand, within GFF910 at 88.928 kb on + strand, within GFF910 at 89.207 kb on - strand, within GFF911 at 89.210 kb on + strand, within GFF911 at 89.211 kb on - strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.213 kb on + strand, within GFF911 at 89.214 kb on - strand, within GFF911 at 89.214 kb on - strand, within GFF911 at 89.219 kb on + strand, within GFF911 at 89.237 kb on - strand, within GFF911 at 89.498 kb on + strand, within GFF911 at 89.518 kb on + strand, within GFF911 at 89.678 kb on + strand, within GFF911 at 89.678 kb on + strand, within GFF911 at 89.679 kb on - strand, within GFF911 at 89.679 kb on - strand, within GFF911 at 89.679 kb on - strand, within GFF911 at 89.759 kb on + strand at 89.759 kb on + strand at 89.830 kb on + strand at 89.830 kb on + strand at 89.870 kb on + strand at 89.871 kb on - strand at 89.873 kb on + strand at 89.874 kb on - strand at 90.096 kb on - strand, within GFF912
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 87,366 + GFF907 0.19 -1.4 87,469 + GFF907 0.51 -0.4 87,629 + -0.2 87,653 + -0.1 87,834 - GFF908 0.53 -0.5 87,859 - GFF908 0.60 +0.1 87,948 - GFF908 0.84 -0.8 88,038 + GFF909 0.11 -0.3 88,038 + GFF909 0.11 -0.8 88,123 + GFF909 0.39 -0.1 88,128 + GFF909 0.41 +0.1 88,128 + GFF909 0.41 +0.0 88,136 - GFF909 0.44 -0.4 88,229 + GFF909 0.74 +0.3 88,230 - GFF909 0.75 +0.1 88,343 - +0.0 88,448 + GFF910 0.15 +1.8 88,688 - GFF910 0.46 -0.0 88,928 + GFF910 0.77 +0.0 89,207 - GFF911 0.14 +0.2 89,210 + GFF911 0.14 +0.0 89,211 - GFF911 0.15 -1.5 89,213 + GFF911 0.15 +0.4 89,213 + GFF911 0.15 -0.4 89,213 + GFF911 0.15 +0.1 89,213 + GFF911 0.15 -0.3 89,213 + GFF911 0.15 -0.1 89,213 + GFF911 0.15 +2.1 89,214 - GFF911 0.15 -0.3 89,214 - GFF911 0.15 -0.1 89,219 + GFF911 0.16 -0.3 89,237 - GFF911 0.19 +0.1 89,498 + GFF911 0.59 +0.1 89,518 + GFF911 0.62 -0.3 89,678 + GFF911 0.87 -0.2 89,678 + GFF911 0.87 -0.2 89,679 - GFF911 0.87 +0.4 89,679 - GFF911 0.87 -1.3 89,679 - GFF911 0.87 +0.9 89,759 + -0.8 89,759 + +0.1 89,830 + +0.1 89,830 + -1.0 89,870 + -0.1 89,871 - -0.2 89,873 + -0.4 89,874 - +0.2 90,096 - GFF912 0.24 +0.3
Or see this region's nucleotide sequence