Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF816 and GFF817 are separated by 53 nucleotides GFF817 and GFF818 are separated by 144 nucleotides
GFF816 - Phage tail assembly protein I, at 161,457 to 161,972
GFF816
GFF817 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 162,026 to 162,550
GFF817
GFF818 - Phage tail fiber protein, at 162,695 to 166,090
GFF818
Position (kb) 162
163
164
165
166
167 Strain fitness (log2 ratio) -2
-1
0
1 at 161.878 kb on - strand, within GFF816 at 162.194 kb on + strand, within GFF817 at 162.236 kb on - strand, within GFF817 at 162.253 kb on + strand, within GFF817 at 162.364 kb on + strand, within GFF817 at 162.694 kb on + strand at 162.718 kb on + strand at 163.099 kb on - strand, within GFF818 at 163.099 kb on - strand, within GFF818 at 163.099 kb on - strand, within GFF818 at 163.153 kb on + strand, within GFF818 at 163.154 kb on - strand, within GFF818 at 163.258 kb on + strand, within GFF818 at 163.400 kb on + strand, within GFF818 at 163.401 kb on - strand, within GFF818 at 163.460 kb on + strand, within GFF818 at 163.461 kb on - strand, within GFF818 at 163.462 kb on + strand, within GFF818 at 163.463 kb on - strand, within GFF818 at 163.463 kb on - strand, within GFF818 at 163.598 kb on + strand, within GFF818 at 163.882 kb on + strand, within GFF818 at 164.151 kb on - strand, within GFF818 at 164.233 kb on - strand, within GFF818 at 164.420 kb on - strand, within GFF818 at 164.444 kb on + strand, within GFF818 at 164.445 kb on - strand, within GFF818 at 164.445 kb on - strand, within GFF818 at 164.539 kb on + strand, within GFF818 at 164.539 kb on + strand, within GFF818 at 164.540 kb on - strand, within GFF818 at 164.540 kb on - strand, within GFF818 at 164.725 kb on + strand, within GFF818 at 164.726 kb on - strand, within GFF818 at 164.753 kb on + strand, within GFF818 at 164.879 kb on - strand, within GFF818 at 164.879 kb on - strand, within GFF818 at 164.901 kb on + strand, within GFF818 at 164.904 kb on - strand, within GFF818 at 164.921 kb on + strand, within GFF818 at 165.003 kb on - strand, within GFF818 at 165.026 kb on - strand, within GFF818 at 165.263 kb on - strand, within GFF818 at 165.263 kb on - strand, within GFF818 at 165.459 kb on + strand, within GFF818 at 165.460 kb on - strand, within GFF818 at 165.485 kb on + strand, within GFF818 at 165.485 kb on + strand, within GFF818 at 165.556 kb on + strand, within GFF818 at 165.586 kb on + strand, within GFF818 at 165.589 kb on + strand, within GFF818 at 165.589 kb on + strand, within GFF818 at 165.589 kb on + strand, within GFF818 at 165.590 kb on - strand, within GFF818 at 165.590 kb on - strand, within GFF818 at 165.681 kb on + strand, within GFF818 at 165.833 kb on + strand at 165.833 kb on + strand at 165.859 kb on + strand at 165.860 kb on - strand at 165.866 kb on - strand at 165.866 kb on - strand at 166.305 kb on + strand at 166.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 161,878 - GFF816 0.82 -0.6 162,194 + GFF817 0.32 -0.4 162,236 - GFF817 0.40 -0.4 162,253 + GFF817 0.43 -0.6 162,364 + GFF817 0.64 -0.6 162,694 + -0.3 162,718 + -0.1 163,099 - GFF818 0.12 -1.5 163,099 - GFF818 0.12 -0.6 163,099 - GFF818 0.12 -0.4 163,153 + GFF818 0.13 -0.6 163,154 - GFF818 0.14 +0.8 163,258 + GFF818 0.17 -0.8 163,400 + GFF818 0.21 -1.7 163,401 - GFF818 0.21 -0.2 163,460 + GFF818 0.23 -0.8 163,461 - GFF818 0.23 -0.6 163,462 + GFF818 0.23 -0.3 163,463 - GFF818 0.23 -0.6 163,463 - GFF818 0.23 -0.0 163,598 + GFF818 0.27 -0.9 163,882 + GFF818 0.35 -1.5 164,151 - GFF818 0.43 -1.2 164,233 - GFF818 0.45 -2.4 164,420 - GFF818 0.51 -0.2 164,444 + GFF818 0.52 -0.4 164,445 - GFF818 0.52 -0.7 164,445 - GFF818 0.52 +0.4 164,539 + GFF818 0.54 -0.2 164,539 + GFF818 0.54 -0.5 164,540 - GFF818 0.54 +1.2 164,540 - GFF818 0.54 -0.2 164,725 + GFF818 0.60 -0.5 164,726 - GFF818 0.60 -0.0 164,753 + GFF818 0.61 -0.2 164,879 - GFF818 0.64 -1.0 164,879 - GFF818 0.64 -0.2 164,901 + GFF818 0.65 -2.0 164,904 - GFF818 0.65 -0.2 164,921 + GFF818 0.66 -0.5 165,003 - GFF818 0.68 -0.5 165,026 - GFF818 0.69 -0.6 165,263 - GFF818 0.76 -0.5 165,263 - GFF818 0.76 -0.8 165,459 + GFF818 0.81 -0.8 165,460 - GFF818 0.81 -0.5 165,485 + GFF818 0.82 -0.5 165,485 + GFF818 0.82 -1.2 165,556 + GFF818 0.84 -1.2 165,586 + GFF818 0.85 -0.2 165,589 + GFF818 0.85 -0.7 165,589 + GFF818 0.85 +1.6 165,589 + GFF818 0.85 -0.6 165,590 - GFF818 0.85 -0.5 165,590 - GFF818 0.85 +0.9 165,681 + GFF818 0.88 +0.2 165,833 + -1.5 165,833 + -0.2 165,859 + +0.3 165,860 - -0.7 165,866 - -0.6 165,866 - -1.5 166,305 + +0.4 166,359 - -0.6
Or see this region's nucleotide sequence