Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF804 and GFF805 overlap by 8 nucleotides GFF805 and GFF806 are separated by 3 nucleotides GFF806 and GFF807 overlap by 4 nucleotides GFF807 and GFF808 are separated by 10 nucleotides GFF808 and GFF809 are separated by 44 nucleotides
GFF804 - putative RecA/RadA recombinase, at 152,602 to 152,925
GFF804
GFF805 - Phage protein, at 152,918 to 153,193
GFF805
GFF806 - Phage tail completion protein, at 153,197 to 153,781
GFF806
GFF807 - Phage minor tail protein, at 153,778 to 154,179
GFF807
GFF808 - Phage major tail protein, at 154,190 to 154,933
GFF808
GFF809 - Phage minor tail protein, at 154,978 to 155,382
GFF809
Position (kb) 153
154
155 Strain fitness (log2 ratio) -1
0
1 at 153.032 kb on - strand, within GFF805 at 153.092 kb on + strand, within GFF805 at 153.253 kb on + strand at 153.554 kb on + strand, within GFF806 at 153.574 kb on + strand, within GFF806 at 153.608 kb on - strand, within GFF806 at 153.706 kb on + strand, within GFF806 at 153.741 kb on - strand at 154.017 kb on + strand, within GFF807 at 154.078 kb on - strand, within GFF807 at 154.083 kb on + strand, within GFF807 at 154.109 kb on - strand, within GFF807 at 154.169 kb on - strand at 154.183 kb on + strand at 154.312 kb on + strand, within GFF808 at 154.364 kb on + strand, within GFF808 at 154.365 kb on - strand, within GFF808 at 154.365 kb on - strand, within GFF808 at 154.741 kb on + strand, within GFF808 at 155.001 kb on + strand at 155.001 kb on + strand at 155.006 kb on - strand at 155.006 kb on - strand at 155.071 kb on - strand, within GFF809 at 155.142 kb on + strand, within GFF809
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 153,032 - GFF805 0.41 -0.4 153,092 + GFF805 0.63 +0.1 153,253 + +0.3 153,554 + GFF806 0.61 +0.4 153,574 + GFF806 0.64 -0.5 153,608 - GFF806 0.70 -0.5 153,706 + GFF806 0.87 -0.5 153,741 - +0.1 154,017 + GFF807 0.59 -0.6 154,078 - GFF807 0.75 -1.4 154,083 + GFF807 0.76 -0.3 154,109 - GFF807 0.82 -0.6 154,169 - -0.5 154,183 + +0.3 154,312 + GFF808 0.16 -0.8 154,364 + GFF808 0.23 -0.3 154,365 - GFF808 0.24 -0.9 154,365 - GFF808 0.24 -0.2 154,741 + GFF808 0.74 -0.6 155,001 + -0.5 155,001 + -0.5 155,006 - -0.4 155,006 - -0.4 155,071 - GFF809 0.23 -0.4 155,142 + GFF809 0.40 +0.3
Or see this region's nucleotide sequence