Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF800 and GFF801 overlap by 4 nucleotides GFF801 and GFF802 overlap by 4 nucleotides GFF802 and GFF803 overlap by 38 nucleotides
GFF800 - Phage terminase, large subunit, at 146,632 to 148,740
GFF800
GFF801 - FIG01047026: hypothetical protein, at 148,737 to 148,943
GFF801
GFF802 - Phage portal protein, at 148,940 to 150,475
GFF802
GFF803 - Prophage Clp protease-like protein, at 150,438 to 152,513
GFF803
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 147.980 kb on + strand, within GFF800 at 147.980 kb on + strand, within GFF800 at 148.014 kb on - strand, within GFF800 at 148.115 kb on + strand, within GFF800 at 148.251 kb on - strand, within GFF800 at 148.264 kb on + strand, within GFF800 at 148.265 kb on - strand, within GFF800 at 148.396 kb on + strand, within GFF800 at 148.396 kb on + strand, within GFF800 at 148.396 kb on + strand, within GFF800 at 148.447 kb on + strand, within GFF800 at 148.523 kb on - strand, within GFF800 at 148.753 kb on + strand at 148.753 kb on + strand at 148.773 kb on + strand, within GFF801 at 149.024 kb on + strand at 149.024 kb on + strand at 149.090 kb on - strand at 149.543 kb on + strand, within GFF802 at 149.708 kb on + strand, within GFF802 at 149.793 kb on - strand, within GFF802 at 149.812 kb on + strand, within GFF802 at 149.813 kb on - strand, within GFF802 at 150.038 kb on + strand, within GFF802 at 150.062 kb on - strand, within GFF802 at 150.148 kb on + strand, within GFF802 at 150.149 kb on - strand, within GFF802 at 150.238 kb on - strand, within GFF802 at 150.238 kb on - strand, within GFF802 at 150.524 kb on + strand at 150.525 kb on - strand at 150.528 kb on + strand at 150.617 kb on + strand at 150.617 kb on + strand at 150.660 kb on + strand, within GFF803 at 150.699 kb on + strand, within GFF803 at 150.700 kb on - strand, within GFF803 at 150.700 kb on - strand, within GFF803 at 151.077 kb on - strand, within GFF803 at 151.184 kb on + strand, within GFF803 at 151.184 kb on + strand, within GFF803 at 151.447 kb on - strand, within GFF803
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 147,980 + GFF800 0.64 -0.8 147,980 + GFF800 0.64 -0.6 148,014 - GFF800 0.66 -1.3 148,115 + GFF800 0.70 -0.5 148,251 - GFF800 0.77 +0.4 148,264 + GFF800 0.77 -0.2 148,265 - GFF800 0.77 -0.3 148,396 + GFF800 0.84 -1.5 148,396 + GFF800 0.84 -0.7 148,396 + GFF800 0.84 -0.5 148,447 + GFF800 0.86 -0.8 148,523 - GFF800 0.90 -0.5 148,753 + -1.6 148,753 + -0.9 148,773 + GFF801 0.17 -0.6 149,024 + +0.1 149,024 + -0.4 149,090 - -1.1 149,543 + GFF802 0.39 -1.2 149,708 + GFF802 0.50 -0.3 149,793 - GFF802 0.56 -0.2 149,812 + GFF802 0.57 -0.6 149,813 - GFF802 0.57 -1.8 150,038 + GFF802 0.71 -0.4 150,062 - GFF802 0.73 -0.1 150,148 + GFF802 0.79 -0.5 150,149 - GFF802 0.79 -0.8 150,238 - GFF802 0.85 -0.4 150,238 - GFF802 0.85 +0.3 150,524 + -0.3 150,525 - -1.4 150,528 + -0.5 150,617 + -0.7 150,617 + -0.3 150,660 + GFF803 0.11 -0.5 150,699 + GFF803 0.13 -0.1 150,700 - GFF803 0.13 -0.7 150,700 - GFF803 0.13 +0.3 151,077 - GFF803 0.31 -0.4 151,184 + GFF803 0.36 -0.8 151,184 + GFF803 0.36 -1.0 151,447 - GFF803 0.49 -0.7
Or see this region's nucleotide sequence