Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF778 and GFF779 overlap by 4 nucleotides GFF779 and GFF780 are separated by 11 nucleotides GFF780 and GFF781 overlap by 11 nucleotides GFF781 and GFF782 overlap by 1 nucleotides GFF782 and GFF783 overlap by 20 nucleotides GFF783 and GFF784 are separated by 187 nucleotides GFF784 and GFF785 are separated by 47 nucleotides
GFF778 - Mobile element protein, at 132,163 to 132,408
GFF778
GFF779 - Ant protein, at 132,405 to 132,740
GFF779
GFF780 - FIG00643896: hypothetical protein, at 132,752 to 133,147
GFF780
GFF781 - Phage protein, at 133,137 to 133,373
GFF781
GFF782 - hypothetical protein, at 133,373 to 133,732
GFF782
GFF783 - Phage protein, at 133,713 to 133,922
GFF783
GFF784 - Phage protein, at 134,110 to 134,244
GFF784
GFF785 - hypothetical protein, at 134,292 to 134,486
GFF785
Position (kb)
133
134 Strain fitness (log2 ratio)
-2
-1
0
1 at 132.236 kb on + strand, within GFF778 at 132.246 kb on + strand, within GFF778 at 132.721 kb on - strand at 133.094 kb on - strand, within GFF780 at 133.094 kb on - strand, within GFF780 at 133.193 kb on + strand, within GFF781 at 133.246 kb on - strand, within GFF781 at 133.862 kb on + strand, within GFF783 at 134.373 kb on + strand, within GFF785
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 132,236 + GFF778 0.30 +0.4 132,246 + GFF778 0.34 -2.2 132,721 - +0.2 133,094 - GFF780 0.86 +1.3 133,094 - GFF780 0.86 -0.6 133,193 + GFF781 0.24 -0.2 133,246 - GFF781 0.46 -0.6 133,862 + GFF783 0.71 -0.6 134,373 + GFF785 0.42 -0.1
Or see this region's nucleotide sequence