Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF763

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF761 and GFF762 overlap by 17 nucleotidesGFF762 and GFF763 are separated by 42 nucleotidesGFF763 and GFF764 are separated by 282 nucleotides GFF761 - Putrescine transport system permease protein PotI (TC 3.A.1.11.2), at 118,742 to 119,587 GFF761 GFF762 - Putative inner membrane protein, at 119,571 to 120,134 GFF762 GFF763 - 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-), at 120,177 to 121,307 GFF763 GFF764 - Ascorbate-specific PTS system, EIIC component, at 121,590 to 122,933 GFF764 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.230 kb on - strand, within GFF761at 119.671 kb on + strand, within GFF762at 119.792 kb on - strand, within GFF762at 119.915 kb on + strand, within GFF762at 119.916 kb on - strand, within GFF762at 119.935 kb on - strand, within GFF762at 119.951 kb on + strand, within GFF762at 120.076 kb on + strand, within GFF762at 120.132 kb on + strandat 120.139 kb on + strandat 120.140 kb on - strandat 120.176 kb on + strandat 120.176 kb on + strandat 120.177 kb on - strandat 120.271 kb on + strandat 120.372 kb on - strand, within GFF763at 120.513 kb on + strand, within GFF763at 120.514 kb on - strand, within GFF763at 120.514 kb on - strand, within GFF763at 120.516 kb on - strand, within GFF763at 120.590 kb on - strand, within GFF763at 120.689 kb on + strand, within GFF763at 120.704 kb on + strand, within GFF763at 120.821 kb on + strand, within GFF763at 120.838 kb on + strand, within GFF763at 120.839 kb on - strand, within GFF763at 121.093 kb on + strand, within GFF763at 122.029 kb on + strand, within GFF764at 122.123 kb on + strand, within GFF764at 122.129 kb on + strand, within GFF764at 122.159 kb on + strand, within GFF764at 122.172 kb on - strand, within GFF764

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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119,230 - GFF761 0.58 +0.0
119,671 + GFF762 0.18 +0.3
119,792 - GFF762 0.39 +0.3
119,915 + GFF762 0.61 +0.0
119,916 - GFF762 0.61 -0.0
119,935 - GFF762 0.65 +0.7
119,951 + GFF762 0.67 +0.5
120,076 + GFF762 0.90 -0.3
120,132 + +0.1
120,139 + +0.3
120,140 - +0.5
120,176 + +1.8
120,176 + -2.0
120,177 - +0.5
120,271 + +0.3
120,372 - GFF763 0.17 +0.5
120,513 + GFF763 0.30 +0.4
120,514 - GFF763 0.30 +0.4
120,514 - GFF763 0.30 +0.5
120,516 - GFF763 0.30 +0.2
120,590 - GFF763 0.37 -0.4
120,689 + GFF763 0.45 -0.4
120,704 + GFF763 0.47 -0.7
120,821 + GFF763 0.57 -0.4
120,838 + GFF763 0.58 -0.4
120,839 - GFF763 0.59 -0.9
121,093 + GFF763 0.81 -0.6
122,029 + GFF764 0.33 -0.9
122,123 + GFF764 0.40 -0.5
122,129 + GFF764 0.40 +0.7
122,159 + GFF764 0.42 +0.3
122,172 - GFF764 0.43 -0.6

Or see this region's nucleotide sequence