Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF728 and GFF729 are separated by 60 nucleotides GFF729 and GFF730 are separated by 2 nucleotides GFF730 and GFF731 are separated by 90 nucleotides
GFF728 - Dipeptide transport system, periplasmic component in protein degradation cluster, at 87,069 to 88,607
GFF728
GFF729 - Dipeptide transport system permease protein DppB in protein degradation cluster, at 88,668 to 89,588
GFF729
GFF730 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 89,591 to 90,502
GFF730
GFF731 - Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase, at 90,593 to 91,918
GFF731
Position (kb) 89
90
91 Strain fitness (log2 ratio) -1
0
1
2 at 88.605 kb on + strand at 88.605 kb on + strand at 88.606 kb on - strand at 88.606 kb on - strand at 88.609 kb on + strand at 88.610 kb on - strand at 88.677 kb on + strand at 88.678 kb on - strand at 88.702 kb on + strand at 88.709 kb on + strand at 88.983 kb on - strand, within GFF729 at 88.983 kb on - strand, within GFF729 at 88.987 kb on + strand, within GFF729 at 89.278 kb on - strand, within GFF729 at 89.326 kb on + strand, within GFF729 at 89.426 kb on + strand, within GFF729 at 89.582 kb on + strand at 89.583 kb on - strand at 89.586 kb on + strand at 89.586 kb on + strand at 89.586 kb on + strand at 89.643 kb on + strand at 89.975 kb on + strand, within GFF730 at 89.975 kb on + strand, within GFF730 at 89.998 kb on + strand, within GFF730 at 90.148 kb on + strand, within GFF730 at 90.148 kb on + strand, within GFF730 at 90.176 kb on - strand, within GFF730 at 90.230 kb on - strand, within GFF730 at 90.231 kb on + strand, within GFF730 at 90.232 kb on - strand, within GFF730 at 90.232 kb on - strand, within GFF730 at 90.687 kb on + strand at 90.724 kb on + strand at 90.830 kb on - strand, within GFF731 at 91.020 kb on - strand, within GFF731 at 91.054 kb on + strand, within GFF731 at 91.210 kb on - strand, within GFF731 at 91.317 kb on - strand, within GFF731 at 91.333 kb on + strand, within GFF731 at 91.334 kb on - strand, within GFF731 at 91.395 kb on - strand, within GFF731 at 91.497 kb on + strand, within GFF731
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 88,605 + +0.0 88,605 + +0.0 88,606 - +0.1 88,606 - +0.9 88,609 + -0.3 88,610 - -0.3 88,677 + +0.1 88,678 - +0.3 88,702 + +0.4 88,709 + +0.0 88,983 - GFF729 0.34 -0.7 88,983 - GFF729 0.34 +0.8 88,987 + GFF729 0.35 +0.0 89,278 - GFF729 0.66 -0.4 89,326 + GFF729 0.71 -0.1 89,426 + GFF729 0.82 +0.2 89,582 + -0.0 89,583 - -0.4 89,586 + -0.0 89,586 + -0.0 89,586 + -0.0 89,643 + +0.4 89,975 + GFF730 0.42 +2.2 89,975 + GFF730 0.42 +0.2 89,998 + GFF730 0.45 +0.0 90,148 + GFF730 0.61 -0.0 90,148 + GFF730 0.61 +0.5 90,176 - GFF730 0.64 -0.1 90,230 - GFF730 0.70 +0.3 90,231 + GFF730 0.70 +1.3 90,232 - GFF730 0.70 +0.5 90,232 - GFF730 0.70 +1.8 90,687 + +0.4 90,724 + -0.6 90,830 - GFF731 0.18 -0.7 91,020 - GFF731 0.32 +0.1 91,054 + GFF731 0.35 +1.3 91,210 - GFF731 0.47 -0.4 91,317 - GFF731 0.55 -0.2 91,333 + GFF731 0.56 +1.3 91,334 - GFF731 0.56 +0.5 91,395 - GFF731 0.60 -0.3 91,497 + GFF731 0.68 +0.6
Or see this region's nucleotide sequence