Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF686 and GFF687 are separated by 2 nucleotides GFF687 and GFF688 overlap by 1 nucleotides GFF688 and GFF689 overlap by 4 nucleotides GFF689 and GFF690 are separated by 132 nucleotides
GFF686 - Putative inner membrane protein, at 42,651 to 43,211
GFF686
GFF687 - Inner membrane protein YbhQ, at 43,214 to 44,176
GFF687
GFF688 - Cardiolipin synthetase (EC 2.7.8.-), at 44,176 to 45,417
GFF688
GFF689 - Endonuclease/Exonuclease/phosphatase family protein, at 45,414 to 46,172
GFF689
GFF690 - Putative inner membrane protein, at 46,305 to 46,715
GFF690
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1 at 43.363 kb on + strand, within GFF687 at 43.363 kb on + strand, within GFF687 at 43.609 kb on + strand, within GFF687 at 43.610 kb on - strand, within GFF687 at 43.644 kb on + strand, within GFF687 at 43.645 kb on - strand, within GFF687 at 43.645 kb on - strand, within GFF687 at 43.654 kb on + strand, within GFF687 at 43.738 kb on + strand, within GFF687 at 43.763 kb on - strand, within GFF687 at 43.783 kb on + strand, within GFF687 at 43.810 kb on + strand, within GFF687 at 43.813 kb on + strand, within GFF687 at 43.814 kb on - strand, within GFF687 at 43.839 kb on + strand, within GFF687 at 43.900 kb on - strand, within GFF687 at 43.996 kb on + strand, within GFF687 at 44.022 kb on - strand, within GFF687 at 44.171 kb on - strand at 44.171 kb on - strand at 44.269 kb on - strand at 44.367 kb on + strand, within GFF688 at 44.367 kb on + strand, within GFF688 at 44.367 kb on + strand, within GFF688 at 44.367 kb on + strand, within GFF688 at 44.368 kb on - strand, within GFF688 at 44.368 kb on - strand, within GFF688 at 44.368 kb on - strand, within GFF688 at 44.368 kb on - strand, within GFF688 at 44.410 kb on + strand, within GFF688 at 44.574 kb on - strand, within GFF688 at 44.604 kb on + strand, within GFF688 at 44.605 kb on - strand, within GFF688 at 44.979 kb on - strand, within GFF688 at 45.013 kb on - strand, within GFF688 at 45.013 kb on - strand, within GFF688 at 45.031 kb on - strand, within GFF688 at 45.031 kb on - strand, within GFF688 at 45.051 kb on + strand, within GFF688 at 45.097 kb on - strand, within GFF688 at 45.215 kb on - strand, within GFF688 at 45.217 kb on + strand, within GFF688 at 45.217 kb on + strand, within GFF688 at 45.217 kb on + strand, within GFF688 at 45.230 kb on - strand, within GFF688 at 45.518 kb on + strand, within GFF689 at 45.519 kb on - strand, within GFF689 at 45.589 kb on - strand, within GFF689 at 45.712 kb on - strand, within GFF689 at 45.712 kb on - strand, within GFF689 at 45.751 kb on - strand, within GFF689 at 45.802 kb on + strand, within GFF689 at 45.907 kb on + strand, within GFF689 at 46.208 kb on - strand at 46.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 43,363 + GFF687 0.15 -0.2 43,363 + GFF687 0.15 +0.5 43,609 + GFF687 0.41 -1.2 43,610 - GFF687 0.41 +0.5 43,644 + GFF687 0.45 +0.1 43,645 - GFF687 0.45 +0.3 43,645 - GFF687 0.45 -0.2 43,654 + GFF687 0.46 -0.3 43,738 + GFF687 0.54 +0.0 43,763 - GFF687 0.57 +0.1 43,783 + GFF687 0.59 -0.3 43,810 + GFF687 0.62 -0.1 43,813 + GFF687 0.62 -0.7 43,814 - GFF687 0.62 -0.6 43,839 + GFF687 0.65 -0.0 43,900 - GFF687 0.71 +0.2 43,996 + GFF687 0.81 -0.1 44,022 - GFF687 0.84 -0.3 44,171 - -0.5 44,171 - -0.5 44,269 - -0.0 44,367 + GFF688 0.15 +0.2 44,367 + GFF688 0.15 +0.1 44,367 + GFF688 0.15 -0.6 44,367 + GFF688 0.15 -0.3 44,368 - GFF688 0.15 +0.2 44,368 - GFF688 0.15 +0.2 44,368 - GFF688 0.15 +0.1 44,368 - GFF688 0.15 +0.0 44,410 + GFF688 0.19 +1.6 44,574 - GFF688 0.32 +0.7 44,604 + GFF688 0.34 +0.3 44,605 - GFF688 0.35 +0.5 44,979 - GFF688 0.65 -0.2 45,013 - GFF688 0.67 +0.4 45,013 - GFF688 0.67 +0.2 45,031 - GFF688 0.69 +0.1 45,031 - GFF688 0.69 -0.3 45,051 + GFF688 0.70 +1.3 45,097 - GFF688 0.74 +0.9 45,215 - GFF688 0.84 -0.1 45,217 + GFF688 0.84 -0.0 45,217 + GFF688 0.84 +0.6 45,217 + GFF688 0.84 +1.0 45,230 - GFF688 0.85 +0.2 45,518 + GFF689 0.14 -0.2 45,519 - GFF689 0.14 -0.1 45,589 - GFF689 0.23 +0.2 45,712 - GFF689 0.39 -0.3 45,712 - GFF689 0.39 -0.8 45,751 - GFF689 0.44 -0.3 45,802 + GFF689 0.51 +0.2 45,907 + GFF689 0.65 -1.2 46,208 - +0.5 46,208 - -0.0
Or see this region's nucleotide sequence