Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF680 and GFF681 overlap by 8 nucleotides GFF681 and GFF682 are separated by 1 nucleotides GFF682 and GFF683 are separated by 47 nucleotides GFF683 and GFF684 are separated by 332 nucleotides GFF684 and GFF685 are separated by 32 nucleotides
GFF680 - Molybdenum cofactor biosynthesis protein MoaC, at 39,228 to 39,713
GFF680
GFF681 - Molybdenum cofactor biosynthesis protein MoaD, at 39,706 to 39,951
GFF681
GFF682 - Molybdenum cofactor biosynthesis protein MoaE, at 39,953 to 40,405
GFF682
GFF683 - Putative membrane protein, at 40,453 to 41,157
GFF683
GFF684 - Putative membrane protein, at 41,490 to 42,011
GFF684
GFF685 - Putative inner membrane protein, at 42,044 to 42,643
GFF685
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2 at 39.510 kb on - strand, within GFF680 at 39.635 kb on + strand, within GFF680 at 39.640 kb on + strand, within GFF680 at 39.641 kb on - strand, within GFF680 at 39.712 kb on - strand at 39.745 kb on - strand, within GFF681 at 40.403 kb on + strand at 40.403 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.526 kb on - strand, within GFF683 at 40.550 kb on + strand, within GFF683 at 40.585 kb on - strand, within GFF683 at 40.687 kb on - strand, within GFF683 at 40.778 kb on - strand, within GFF683 at 40.844 kb on - strand, within GFF683 at 40.879 kb on - strand, within GFF683 at 41.324 kb on - strand at 41.573 kb on + strand, within GFF684 at 41.804 kb on - strand, within GFF684 at 41.830 kb on + strand, within GFF684
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 39,510 - GFF680 0.58 +0.1 39,635 + GFF680 0.84 +0.3 39,640 + GFF680 0.85 -0.9 39,641 - GFF680 0.85 -0.0 39,712 - -0.4 39,745 - GFF681 0.16 -0.3 40,403 + +0.2 40,403 + -0.1 40,510 + -0.1 40,510 + +0.2 40,510 + +0.0 40,511 - +2.1 40,526 - GFF683 0.10 -1.4 40,550 + GFF683 0.14 +0.2 40,585 - GFF683 0.19 +1.2 40,687 - GFF683 0.33 +0.3 40,778 - GFF683 0.46 +0.6 40,844 - GFF683 0.55 -0.0 40,879 - GFF683 0.60 +0.1 41,324 - -0.0 41,573 + GFF684 0.16 +0.3 41,804 - GFF684 0.60 +0.5 41,830 + GFF684 0.65 +0.7
Or see this region's nucleotide sequence