Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF555 and GFF556 are separated by 63 nucleotides GFF556 and GFF557 overlap by 4 nucleotides GFF557 and GFF558 are separated by 1 nucleotides
GFF555 - Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3), at 285,401 to 286,717
GFF555
GFF556 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 286,781 to 287,668
GFF556
GFF557 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 287,665 to 288,510
GFF557
GFF558 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 288,512 to 289,582
GFF558
Position (kb) 286
287
288 Strain fitness (log2 ratio) -1
0
1 at 285.783 kb on - strand, within GFF555 at 285.783 kb on - strand, within GFF555 at 285.824 kb on - strand, within GFF555 at 285.849 kb on - strand, within GFF555 at 285.923 kb on + strand, within GFF555 at 285.923 kb on + strand, within GFF555 at 285.924 kb on - strand, within GFF555 at 286.142 kb on + strand, within GFF555 at 286.253 kb on + strand, within GFF555 at 286.254 kb on - strand, within GFF555 at 286.330 kb on - strand, within GFF555 at 286.485 kb on - strand, within GFF555 at 286.534 kb on + strand, within GFF555 at 286.576 kb on + strand, within GFF555 at 286.576 kb on + strand, within GFF555 at 286.721 kb on + strand at 286.721 kb on + strand at 286.722 kb on - strand at 286.722 kb on - strand at 286.723 kb on + strand at 286.723 kb on + strand at 286.724 kb on - strand at 286.979 kb on + strand, within GFF556 at 286.980 kb on - strand, within GFF556 at 287.075 kb on + strand, within GFF556 at 287.075 kb on + strand, within GFF556 at 287.076 kb on - strand, within GFF556 at 287.123 kb on + strand, within GFF556 at 287.151 kb on + strand, within GFF556 at 287.188 kb on - strand, within GFF556 at 287.265 kb on + strand, within GFF556 at 287.290 kb on + strand, within GFF556 at 287.291 kb on - strand, within GFF556 at 287.411 kb on - strand, within GFF556 at 287.651 kb on - strand at 287.869 kb on - strand, within GFF557 at 287.949 kb on + strand, within GFF557 at 287.949 kb on + strand, within GFF557 at 287.950 kb on - strand, within GFF557 at 288.097 kb on + strand, within GFF557 at 288.098 kb on - strand, within GFF557 at 288.293 kb on - strand, within GFF557 at 288.307 kb on + strand, within GFF557 at 288.307 kb on + strand, within GFF557 at 288.452 kb on + strand at 288.462 kb on - strand at 288.528 kb on + strand at 288.537 kb on + strand at 288.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 285,783 - GFF555 0.29 -1.4 285,783 - GFF555 0.29 -0.7 285,824 - GFF555 0.32 +0.5 285,849 - GFF555 0.34 +0.3 285,923 + GFF555 0.40 +0.0 285,923 + GFF555 0.40 -0.4 285,924 - GFF555 0.40 -0.5 286,142 + GFF555 0.56 -0.1 286,253 + GFF555 0.65 -0.4 286,254 - GFF555 0.65 +0.2 286,330 - GFF555 0.71 -0.9 286,485 - GFF555 0.82 -1.1 286,534 + GFF555 0.86 -0.6 286,576 + GFF555 0.89 +0.1 286,576 + GFF555 0.89 -0.0 286,721 + +0.2 286,721 + -0.1 286,722 - -1.4 286,722 - +0.1 286,723 + -0.1 286,723 + +0.2 286,724 - +1.2 286,979 + GFF556 0.22 -0.2 286,980 - GFF556 0.22 +0.0 287,075 + GFF556 0.33 -0.8 287,075 + GFF556 0.33 -0.0 287,076 - GFF556 0.33 +0.6 287,123 + GFF556 0.39 +0.2 287,151 + GFF556 0.42 -0.5 287,188 - GFF556 0.46 -0.3 287,265 + GFF556 0.55 -0.8 287,290 + GFF556 0.57 +0.0 287,291 - GFF556 0.57 -0.4 287,411 - GFF556 0.71 -0.1 287,651 - -0.6 287,869 - GFF557 0.24 -0.1 287,949 + GFF557 0.34 +0.3 287,949 + GFF557 0.34 +0.3 287,950 - GFF557 0.34 +0.3 288,097 + GFF557 0.51 -0.1 288,098 - GFF557 0.51 -0.4 288,293 - GFF557 0.74 -0.1 288,307 + GFF557 0.76 +0.2 288,307 + GFF557 0.76 +0.2 288,452 + -0.7 288,462 - +0.3 288,528 + +1.2 288,537 + -0.3 288,608 - +1.4
Or see this region's nucleotide sequence