Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF551 and GFF552 are separated by 1 nucleotides GFF552 and GFF553 are separated by 131 nucleotides GFF553 and GFF554 are separated by 107 nucleotides GFF554 and GFF555 are separated by 258 nucleotides
GFF551 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 282,942 to 283,709
GFF551
GFF552 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 283,711 to 284,424
GFF552
GFF553 - RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE), at 284,556 to 284,777
GFF553
GFF554 - Death on curing protein, Doc toxin, at 284,885 to 285,142
GFF554
GFF555 - Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3), at 285,401 to 286,717
GFF555
Position (kb) 284
285 Strain fitness (log2 ratio) -2
-1
0
1 at 283.580 kb on + strand, within GFF551 at 283.693 kb on - strand at 283.708 kb on - strand at 283.708 kb on - strand at 283.908 kb on + strand, within GFF552 at 283.917 kb on - strand, within GFF552 at 284.059 kb on - strand, within GFF552 at 284.072 kb on - strand, within GFF552 at 284.183 kb on + strand, within GFF552 at 284.184 kb on - strand, within GFF552 at 284.410 kb on + strand at 284.411 kb on - strand at 284.530 kb on - strand at 284.538 kb on - strand at 284.571 kb on + strand at 284.572 kb on - strand at 284.572 kb on - strand at 284.572 kb on - strand at 284.654 kb on + strand, within GFF553 at 284.781 kb on + strand at 284.788 kb on + strand at 284.806 kb on - strand at 284.884 kb on - strand at 285.009 kb on + strand, within GFF554 at 285.013 kb on + strand, within GFF554 at 285.013 kb on + strand, within GFF554 at 285.017 kb on - strand, within GFF554 at 285.107 kb on - strand, within GFF554 at 285.132 kb on + strand at 285.204 kb on + strand at 285.204 kb on + strand at 285.212 kb on + strand at 285.213 kb on - strand at 285.216 kb on + strand at 285.284 kb on - strand at 285.395 kb on + strand at 285.395 kb on + strand at 285.418 kb on + strand at 285.426 kb on + strand at 285.581 kb on + strand, within GFF555 at 285.581 kb on + strand, within GFF555 at 285.583 kb on + strand, within GFF555 at 285.593 kb on + strand, within GFF555 at 285.593 kb on + strand, within GFF555 at 285.593 kb on + strand, within GFF555 at 285.593 kb on + strand, within GFF555 at 285.594 kb on - strand, within GFF555 at 285.594 kb on - strand, within GFF555 at 285.594 kb on - strand, within GFF555 at 285.652 kb on - strand, within GFF555 at 285.652 kb on - strand, within GFF555 at 285.662 kb on + strand, within GFF555 at 285.736 kb on + strand, within GFF555 at 285.739 kb on + strand, within GFF555 at 285.739 kb on + strand, within GFF555
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 283,580 + GFF551 0.83 -0.1 283,693 - -0.2 283,708 - -2.5 283,708 - -0.1 283,908 + GFF552 0.28 +0.2 283,917 - GFF552 0.29 +1.3 284,059 - GFF552 0.49 -0.2 284,072 - GFF552 0.51 +0.0 284,183 + GFF552 0.66 -0.1 284,184 - GFF552 0.66 +0.1 284,410 + +0.0 284,411 - -0.3 284,530 - +0.3 284,538 - +0.8 284,571 + -0.3 284,572 - -2.0 284,572 - -0.8 284,572 - -0.2 284,654 + GFF553 0.44 -0.5 284,781 + +0.7 284,788 + -0.1 284,806 - -0.1 284,884 - +0.1 285,009 + GFF554 0.48 +0.2 285,013 + GFF554 0.50 -0.1 285,013 + GFF554 0.50 -0.2 285,017 - GFF554 0.51 -0.2 285,107 - GFF554 0.86 -0.6 285,132 + +0.4 285,204 + +0.4 285,204 + -0.7 285,212 + +0.0 285,213 - +0.8 285,216 + +0.1 285,284 - +0.0 285,395 + +0.4 285,395 + +1.6 285,418 + -0.2 285,426 + -0.2 285,581 + GFF555 0.14 -0.2 285,581 + GFF555 0.14 +0.4 285,583 + GFF555 0.14 -0.4 285,593 + GFF555 0.15 -0.0 285,593 + GFF555 0.15 -0.0 285,593 + GFF555 0.15 -0.5 285,593 + GFF555 0.15 +0.1 285,594 - GFF555 0.15 -0.2 285,594 - GFF555 0.15 +0.3 285,594 - GFF555 0.15 +0.1 285,652 - GFF555 0.19 +0.4 285,652 - GFF555 0.19 -0.6 285,662 + GFF555 0.20 -0.2 285,736 + GFF555 0.25 +0.2 285,739 + GFF555 0.26 +0.5 285,739 + GFF555 0.26 +1.1
Or see this region's nucleotide sequence