Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF546 and GFF547 overlap by 23 nucleotides GFF547 and GFF548 are separated by 484 nucleotides GFF548 and GFF549 are separated by 59 nucleotides GFF549 and GFF550 overlap by 4 nucleotides
GFF546 - hypothetical protein, at 278,659 to 278,793
GFF546
GFF547 - probable acetyltransferase YPO3809, at 278,771 to 279,154
GFF547
GFF548 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 279,639 to 280,685
GFF548
GFF549 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 280,745 to 281,671
GFF549
GFF550 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 281,668 to 282,945
GFF550
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1 at 278.639 kb on + strand at 278.640 kb on - strand at 278.640 kb on - strand at 278.640 kb on - strand at 278.643 kb on + strand at 278.643 kb on + strand at 278.644 kb on - strand at 278.644 kb on - strand at 278.803 kb on + strand at 278.909 kb on + strand, within GFF547 at 278.909 kb on + strand, within GFF547 at 278.917 kb on - strand, within GFF547 at 279.000 kb on - strand, within GFF547 at 279.057 kb on - strand, within GFF547 at 279.131 kb on + strand at 279.283 kb on + strand at 279.547 kb on + strand at 279.619 kb on + strand at 279.653 kb on + strand at 279.654 kb on - strand at 279.863 kb on + strand, within GFF548 at 279.910 kb on - strand, within GFF548 at 279.981 kb on + strand, within GFF548 at 279.981 kb on + strand, within GFF548 at 280.035 kb on + strand, within GFF548 at 280.035 kb on + strand, within GFF548 at 280.070 kb on + strand, within GFF548 at 280.149 kb on - strand, within GFF548 at 280.166 kb on + strand, within GFF548 at 280.248 kb on + strand, within GFF548 at 280.249 kb on - strand, within GFF548 at 280.311 kb on - strand, within GFF548 at 280.332 kb on - strand, within GFF548 at 280.470 kb on + strand, within GFF548 at 280.486 kb on - strand, within GFF548 at 280.622 kb on + strand at 280.622 kb on + strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.740 kb on - strand at 280.744 kb on + strand at 280.745 kb on - strand at 280.822 kb on + strand at 280.831 kb on + strand at 280.831 kb on + strand at 280.831 kb on + strand at 280.832 kb on - strand at 280.842 kb on - strand, within GFF549 at 280.842 kb on - strand, within GFF549 at 280.883 kb on + strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.884 kb on - strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.885 kb on + strand, within GFF549 at 280.886 kb on - strand, within GFF549 at 280.898 kb on + strand, within GFF549 at 280.899 kb on - strand, within GFF549 at 280.910 kb on - strand, within GFF549 at 280.942 kb on - strand, within GFF549 at 280.988 kb on - strand, within GFF549 at 280.988 kb on - strand, within GFF549 at 281.229 kb on + strand, within GFF549 at 281.341 kb on + strand, within GFF549 at 281.342 kb on - strand, within GFF549 at 281.452 kb on + strand, within GFF549 at 281.565 kb on - strand, within GFF549 at 281.568 kb on + strand, within GFF549 at 281.573 kb on - strand, within GFF549 at 281.581 kb on + strand at 281.582 kb on - strand at 281.582 kb on - strand at 281.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 278,639 + +0.4 278,640 - -0.4 278,640 - +0.6 278,640 - -0.3 278,643 + +0.1 278,643 + -0.2 278,644 - +0.7 278,644 - +0.2 278,803 + +0.7 278,909 + GFF547 0.36 +0.3 278,909 + GFF547 0.36 -0.4 278,917 - GFF547 0.38 -0.1 279,000 - GFF547 0.60 -0.3 279,057 - GFF547 0.74 +0.5 279,131 + +0.5 279,283 + +0.0 279,547 + -0.1 279,619 + +0.1 279,653 + +1.0 279,654 - -0.3 279,863 + GFF548 0.21 +0.1 279,910 - GFF548 0.26 -1.4 279,981 + GFF548 0.33 +0.1 279,981 + GFF548 0.33 -1.9 280,035 + GFF548 0.38 -0.5 280,035 + GFF548 0.38 +0.2 280,070 + GFF548 0.41 -0.9 280,149 - GFF548 0.49 +0.2 280,166 + GFF548 0.50 -0.4 280,248 + GFF548 0.58 +0.5 280,249 - GFF548 0.58 -0.2 280,311 - GFF548 0.64 -0.3 280,332 - GFF548 0.66 -0.3 280,470 + GFF548 0.79 +0.0 280,486 - GFF548 0.81 +0.4 280,622 + +0.2 280,622 + -0.3 280,697 - -0.3 280,697 - +0.1 280,740 - +0.2 280,744 + -0.1 280,745 - -0.4 280,822 + +1.1 280,831 + +0.0 280,831 + -0.1 280,831 + -0.1 280,832 - -0.1 280,842 - GFF549 0.10 +0.2 280,842 - GFF549 0.10 -0.4 280,883 + GFF549 0.15 -0.6 280,884 - GFF549 0.15 -0.4 280,884 - GFF549 0.15 +1.0 280,884 - GFF549 0.15 -0.4 280,884 - GFF549 0.15 -0.3 280,884 - GFF549 0.15 -0.1 280,885 + GFF549 0.15 +0.2 280,885 + GFF549 0.15 -0.1 280,885 + GFF549 0.15 -0.1 280,885 + GFF549 0.15 +0.6 280,886 - GFF549 0.15 +0.3 280,898 + GFF549 0.17 +0.2 280,899 - GFF549 0.17 +0.4 280,910 - GFF549 0.18 -0.9 280,942 - GFF549 0.21 -0.2 280,988 - GFF549 0.26 -0.1 280,988 - GFF549 0.26 +0.2 281,229 + GFF549 0.52 +0.4 281,341 + GFF549 0.64 +0.0 281,342 - GFF549 0.64 -1.2 281,452 + GFF549 0.76 -0.1 281,565 - GFF549 0.88 -0.2 281,568 + GFF549 0.89 -0.1 281,573 - GFF549 0.89 +0.0 281,581 + -0.3 281,582 - +0.2 281,582 - -0.3 281,582 - +0.2
Or see this region's nucleotide sequence