Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF533 and GFF534 are separated by 4 nucleotides GFF534 and GFF535 are separated by 23 nucleotides GFF535 and GFF536 are separated by 199 nucleotides
GFF533 - Putative preQ0 transporter, at 265,489 to 266,229
GFF533
GFF534 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusA, at 266,234 to 266,569
GFF534
GFF535 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 266,593 to 268,236
GFF535
GFF536 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 268,436 to 270,634
GFF536
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -2
-1
0
1 at 265.607 kb on + strand, within GFF533 at 265.644 kb on + strand, within GFF533 at 265.807 kb on - strand, within GFF533 at 265.883 kb on + strand, within GFF533 at 265.883 kb on + strand, within GFF533 at 265.884 kb on - strand, within GFF533 at 265.904 kb on + strand, within GFF533 at 265.904 kb on + strand, within GFF533 at 266.102 kb on - strand, within GFF533 at 266.102 kb on - strand, within GFF533 at 266.126 kb on - strand, within GFF533 at 266.142 kb on + strand, within GFF533 at 266.208 kb on + strand at 266.211 kb on + strand at 266.212 kb on - strand at 266.582 kb on + strand at 266.582 kb on + strand at 266.583 kb on - strand at 266.585 kb on + strand at 266.586 kb on - strand at 266.650 kb on + strand at 266.877 kb on + strand, within GFF535 at 267.031 kb on + strand, within GFF535 at 267.088 kb on + strand, within GFF535 at 267.112 kb on - strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.305 kb on - strand, within GFF535 at 267.407 kb on + strand, within GFF535 at 267.408 kb on - strand, within GFF535 at 267.412 kb on - strand, within GFF535 at 267.518 kb on - strand, within GFF535 at 267.586 kb on + strand, within GFF535 at 267.631 kb on + strand, within GFF535 at 267.637 kb on - strand, within GFF535 at 267.641 kb on - strand, within GFF535 at 267.701 kb on - strand, within GFF535 at 267.740 kb on + strand, within GFF535 at 267.741 kb on - strand, within GFF535 at 267.742 kb on + strand, within GFF535 at 267.742 kb on + strand, within GFF535 at 267.743 kb on - strand, within GFF535 at 267.743 kb on - strand, within GFF535 at 267.798 kb on - strand, within GFF535 at 267.802 kb on - strand, within GFF535 at 267.843 kb on - strand, within GFF535 at 267.917 kb on + strand, within GFF535 at 268.189 kb on + strand at 268.458 kb on - strand at 268.532 kb on + strand at 268.702 kb on + strand, within GFF536
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 265,607 + GFF533 0.16 -0.5 265,644 + GFF533 0.21 +0.3 265,807 - GFF533 0.43 +0.2 265,883 + GFF533 0.53 +0.1 265,883 + GFF533 0.53 -0.0 265,884 - GFF533 0.53 +0.6 265,904 + GFF533 0.56 +0.8 265,904 + GFF533 0.56 -0.3 266,102 - GFF533 0.83 -0.3 266,102 - GFF533 0.83 +0.7 266,126 - GFF533 0.86 +0.0 266,142 + GFF533 0.88 +0.3 266,208 + -0.0 266,211 + -0.6 266,212 - +0.1 266,582 + -0.1 266,582 + -0.1 266,583 - +0.4 266,585 + -0.2 266,586 - -0.2 266,650 + -0.4 266,877 + GFF535 0.17 -1.4 267,031 + GFF535 0.27 +0.3 267,088 + GFF535 0.30 -0.1 267,112 - GFF535 0.32 +0.1 267,199 + GFF535 0.37 +0.9 267,199 + GFF535 0.37 -0.4 267,199 + GFF535 0.37 -1.1 267,199 + GFF535 0.37 +0.3 267,305 - GFF535 0.43 -0.4 267,407 + GFF535 0.50 +0.3 267,408 - GFF535 0.50 -0.3 267,412 - GFF535 0.50 +0.6 267,518 - GFF535 0.56 -0.3 267,586 + GFF535 0.60 +0.3 267,631 + GFF535 0.63 -0.5 267,637 - GFF535 0.64 +0.5 267,641 - GFF535 0.64 -0.0 267,701 - GFF535 0.67 +1.2 267,740 + GFF535 0.70 +0.2 267,741 - GFF535 0.70 +0.0 267,742 + GFF535 0.70 +0.2 267,742 + GFF535 0.70 +0.4 267,743 - GFF535 0.70 -0.5 267,743 - GFF535 0.70 +0.0 267,798 - GFF535 0.73 +0.1 267,802 - GFF535 0.74 +0.6 267,843 - GFF535 0.76 +0.4 267,917 + GFF535 0.81 +0.2 268,189 + -2.6 268,458 - -0.6 268,532 + -0.6 268,702 + GFF536 0.12 -0.0
Or see this region's nucleotide sequence