Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF52

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF51 and GFF52 are separated by 144 nucleotidesGFF52 and GFF53 are separated by 257 nucleotides GFF51 - Uridine monophosphate kinase (EC 2.7.4.22), at 32,088 to 32,813 GFF51 GFF52 - Translation elongation factor Ts, at 32,958 to 33,809 GFF52 GFF53 - SSU ribosomal protein S2p (SAe), at 34,067 to 34,792 GFF53 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.992 kb on - strandat 32.005 kb on - strandat 32.038 kb on - strandat 32.868 kb on - strandat 32.970 kb on - strandat 34.056 kb on - strandat 34.056 kb on - strandat 34.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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31,992 - -0.2
32,005 - -0.3
32,038 - +0.2
32,868 - -0.0
32,970 - -0.6
34,056 - -0.5
34,056 - -0.8
34,056 - -0.9

Or see this region's nucleotide sequence