Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4914 and GFF4915 overlap by 4 nucleotides GFF4915 and GFF4916 overlap by 4 nucleotides GFF4916 and GFF4917 are separated by 400 nucleotides
GFF4914 - Putative nucleotide di-P-sugar epimerase or dehydratase, at 17,549 to 18,562
GFF4914
GFF4915 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 18,559 to 19,389
GFF4915
GFF4916 - FIG00639119: hypothetical protein, at 19,386 to 19,709
GFF4916
GFF4917 - hypothetical protein, at 20,110 to 20,247
GFF4917
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 17.777 kb on - strand, within GFF4914 at 17.882 kb on - strand, within GFF4914 at 18.045 kb on + strand, within GFF4914 at 18.082 kb on - strand, within GFF4914 at 18.082 kb on - strand, within GFF4914 at 18.104 kb on - strand, within GFF4914 at 18.117 kb on - strand, within GFF4914 at 18.167 kb on + strand, within GFF4914 at 18.167 kb on + strand, within GFF4914 at 18.243 kb on - strand, within GFF4914 at 18.243 kb on - strand, within GFF4914 at 18.243 kb on - strand, within GFF4914 at 18.274 kb on - strand, within GFF4914 at 18.286 kb on - strand, within GFF4914 at 18.353 kb on - strand, within GFF4914 at 18.445 kb on + strand, within GFF4914 at 18.572 kb on + strand at 18.573 kb on - strand at 18.710 kb on + strand, within GFF4915 at 18.711 kb on - strand, within GFF4915 at 18.921 kb on + strand, within GFF4915 at 18.921 kb on + strand, within GFF4915 at 18.934 kb on - strand, within GFF4915 at 18.937 kb on - strand, within GFF4915 at 19.051 kb on - strand, within GFF4915 at 19.149 kb on - strand, within GFF4915 at 19.149 kb on - strand, within GFF4915 at 19.175 kb on + strand, within GFF4915 at 19.434 kb on - strand, within GFF4916 at 19.434 kb on - strand, within GFF4916 at 19.460 kb on - strand, within GFF4916 at 19.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 17,777 - GFF4914 0.22 -1.1 17,882 - GFF4914 0.33 -0.7 18,045 + GFF4914 0.49 -0.2 18,082 - GFF4914 0.53 -0.1 18,082 - GFF4914 0.53 +1.2 18,104 - GFF4914 0.55 +1.1 18,117 - GFF4914 0.56 +0.3 18,167 + GFF4914 0.61 -0.0 18,167 + GFF4914 0.61 +0.6 18,243 - GFF4914 0.68 +1.2 18,243 - GFF4914 0.68 +0.1 18,243 - GFF4914 0.68 -0.2 18,274 - GFF4914 0.71 -0.5 18,286 - GFF4914 0.73 +0.7 18,353 - GFF4914 0.79 +0.7 18,445 + GFF4914 0.88 -0.6 18,572 + -0.4 18,573 - +0.5 18,710 + GFF4915 0.18 -0.2 18,711 - GFF4915 0.18 +0.1 18,921 + GFF4915 0.44 +0.5 18,921 + GFF4915 0.44 -0.5 18,934 - GFF4915 0.45 +0.4 18,937 - GFF4915 0.45 -0.0 19,051 - GFF4915 0.59 +0.5 19,149 - GFF4915 0.71 +0.4 19,149 - GFF4915 0.71 +0.1 19,175 + GFF4915 0.74 +1.2 19,434 - GFF4916 0.15 -0.6 19,434 - GFF4916 0.15 +0.1 19,460 - GFF4916 0.23 -1.0 19,731 - -0.7
Or see this region's nucleotide sequence