Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4905 and GFF4906 are separated by 145 nucleotides GFF4906 and GFF4907 overlap by 4 nucleotides
GFF4905 - Macrolide-specific efflux protein MacA, at 5,347 to 6,465
GFF4905
GFF4906 - Virulence factor VirK, at 6,611 to 7,561
GFF4906
GFF4907 - Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup, at 7,558 to 9,216
GFF4907
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1 at 5.974 kb on + strand, within GFF4905 at 5.974 kb on + strand, within GFF4905 at 5.974 kb on + strand, within GFF4905 at 5.974 kb on + strand, within GFF4905 at 5.975 kb on - strand, within GFF4905 at 5.975 kb on - strand, within GFF4905 at 6.054 kb on + strand, within GFF4905 at 6.059 kb on - strand, within GFF4905 at 6.097 kb on + strand, within GFF4905 at 6.200 kb on - strand, within GFF4905 at 6.214 kb on - strand, within GFF4905 at 6.377 kb on - strand at 6.378 kb on - strand at 6.592 kb on + strand at 6.593 kb on - strand at 6.593 kb on - strand at 6.650 kb on + strand at 6.651 kb on - strand at 6.757 kb on - strand, within GFF4906 at 6.813 kb on + strand, within GFF4906 at 6.868 kb on + strand, within GFF4906 at 6.876 kb on + strand, within GFF4906 at 7.303 kb on + strand, within GFF4906 at 7.303 kb on + strand, within GFF4906 at 7.336 kb on + strand, within GFF4906 at 7.337 kb on - strand, within GFF4906 at 7.427 kb on + strand, within GFF4906 at 7.427 kb on + strand, within GFF4906 at 7.432 kb on + strand, within GFF4906 at 7.480 kb on + strand at 7.788 kb on + strand, within GFF4907 at 7.989 kb on + strand, within GFF4907 at 8.037 kb on + strand, within GFF4907 at 8.321 kb on - strand, within GFF4907 at 8.367 kb on + strand, within GFF4907 at 8.491 kb on - strand, within GFF4907 at 8.561 kb on + strand, within GFF4907
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 5,974 + GFF4905 0.56 +0.3 5,974 + GFF4905 0.56 -0.9 5,974 + GFF4905 0.56 -0.3 5,974 + GFF4905 0.56 -0.3 5,975 - GFF4905 0.56 +0.1 5,975 - GFF4905 0.56 +0.2 6,054 + GFF4905 0.63 +0.1 6,059 - GFF4905 0.64 +1.3 6,097 + GFF4905 0.67 -0.4 6,200 - GFF4905 0.76 +0.1 6,214 - GFF4905 0.77 -0.3 6,377 - +0.9 6,378 - +0.6 6,592 + +0.4 6,593 - +0.2 6,593 - +0.0 6,650 + +0.2 6,651 - +0.3 6,757 - GFF4906 0.15 +0.8 6,813 + GFF4906 0.21 +0.6 6,868 + GFF4906 0.27 +0.3 6,876 + GFF4906 0.28 +0.3 7,303 + GFF4906 0.73 +0.7 7,303 + GFF4906 0.73 -1.7 7,336 + GFF4906 0.76 +0.1 7,337 - GFF4906 0.76 +0.5 7,427 + GFF4906 0.86 -0.1 7,427 + GFF4906 0.86 +0.0 7,432 + GFF4906 0.86 +0.6 7,480 + +0.6 7,788 + GFF4907 0.14 -0.9 7,989 + GFF4907 0.26 -0.6 8,037 + GFF4907 0.29 +0.3 8,321 - GFF4907 0.46 +0.2 8,367 + GFF4907 0.49 +0.7 8,491 - GFF4907 0.56 +0.5 8,561 + GFF4907 0.60 -0.5
Or see this region's nucleotide sequence