Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4897 and GFF4898 are separated by 236 nucleotides
GFF4897 - Seryl-tRNA synthetase (EC 6.1.1.11), at 18,036 to 19,328
GFF4897
GFF4898 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 19,565 to 22,009
GFF4898
Position (kb) 19
20
21
22
23 Strain fitness (log2 ratio) -1
0
1 at 19.573 kb on + strand at 19.753 kb on + strand at 19.754 kb on - strand at 19.786 kb on + strand at 19.786 kb on + strand at 19.786 kb on + strand at 19.819 kb on - strand, within GFF4898 at 19.847 kb on + strand, within GFF4898 at 19.892 kb on - strand, within GFF4898 at 19.907 kb on + strand, within GFF4898 at 19.907 kb on + strand, within GFF4898 at 19.910 kb on - strand, within GFF4898 at 19.976 kb on - strand, within GFF4898 at 19.979 kb on - strand, within GFF4898 at 20.015 kb on - strand, within GFF4898 at 20.208 kb on - strand, within GFF4898 at 20.214 kb on - strand, within GFF4898 at 20.260 kb on + strand, within GFF4898 at 20.320 kb on - strand, within GFF4898 at 20.328 kb on - strand, within GFF4898 at 20.469 kb on - strand, within GFF4898 at 20.513 kb on - strand, within GFF4898 at 20.583 kb on - strand, within GFF4898 at 20.585 kb on - strand, within GFF4898 at 20.641 kb on + strand, within GFF4898 at 20.812 kb on + strand, within GFF4898 at 20.857 kb on + strand, within GFF4898 at 20.857 kb on + strand, within GFF4898 at 20.971 kb on + strand, within GFF4898 at 21.005 kb on + strand, within GFF4898 at 21.109 kb on + strand, within GFF4898 at 21.209 kb on + strand, within GFF4898 at 21.253 kb on + strand, within GFF4898 at 21.457 kb on + strand, within GFF4898 at 21.494 kb on - strand, within GFF4898 at 21.618 kb on - strand, within GFF4898 at 21.619 kb on + strand, within GFF4898 at 21.681 kb on + strand, within GFF4898 at 21.692 kb on + strand, within GFF4898 at 21.692 kb on + strand, within GFF4898 at 21.692 kb on + strand, within GFF4898 at 21.817 kb on - strand at 21.820 kb on + strand at 21.884 kb on + strand at 21.931 kb on - strand at 21.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 19,573 + -0.6 19,753 + -0.1 19,754 - +0.6 19,786 + +0.3 19,786 + +0.6 19,786 + +0.2 19,819 - GFF4898 0.10 -0.3 19,847 + GFF4898 0.12 -0.3 19,892 - GFF4898 0.13 -0.3 19,907 + GFF4898 0.14 +0.0 19,907 + GFF4898 0.14 +0.2 19,910 - GFF4898 0.14 +1.4 19,976 - GFF4898 0.17 -0.6 19,979 - GFF4898 0.17 +0.1 20,015 - GFF4898 0.18 +0.3 20,208 - GFF4898 0.26 -0.9 20,214 - GFF4898 0.27 +0.3 20,260 + GFF4898 0.28 -0.4 20,320 - GFF4898 0.31 -0.7 20,328 - GFF4898 0.31 -0.9 20,469 - GFF4898 0.37 -0.0 20,513 - GFF4898 0.39 +0.6 20,583 - GFF4898 0.42 +0.9 20,585 - GFF4898 0.42 -0.4 20,641 + GFF4898 0.44 -0.3 20,812 + GFF4898 0.51 +0.2 20,857 + GFF4898 0.53 +0.2 20,857 + GFF4898 0.53 +0.9 20,971 + GFF4898 0.58 -0.9 21,005 + GFF4898 0.59 -0.0 21,109 + GFF4898 0.63 +0.1 21,209 + GFF4898 0.67 +0.4 21,253 + GFF4898 0.69 -0.4 21,457 + GFF4898 0.77 -0.5 21,494 - GFF4898 0.79 -0.4 21,618 - GFF4898 0.84 -0.2 21,619 + GFF4898 0.84 -0.6 21,681 + GFF4898 0.87 -1.0 21,692 + GFF4898 0.87 +0.3 21,692 + GFF4898 0.87 +0.1 21,692 + GFF4898 0.87 -0.5 21,817 - +0.5 21,820 + +0.2 21,884 + +0.6 21,931 - +0.3 21,979 + -0.4
Or see this region's nucleotide sequence