Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF480 and GFF481 are separated by 117 nucleotides GFF481 and GFF482 overlap by 4 nucleotides GFF482 and GFF483 are separated by 103 nucleotides GFF483 and GFF484 are separated by 81 nucleotides
GFF480 - Serine transporter, at 202,849 to 204,147
GFF480
GFF481 - hypothetical protein, at 204,265 to 204,405
GFF481
GFF482 - FIG01047459: hypothetical protein, at 204,402 to 204,662
GFF482
GFF483 - hypothetical protein, at 204,766 to 204,897
GFF483
GFF484 - FIG002337: predicted inner membrane protein, at 204,979 to 206,658
GFF484
Position (kb) 204
205 Strain fitness (log2 ratio) -1
0
1 at 203.824 kb on + strand, within GFF480 at 204.011 kb on - strand, within GFF480 at 204.147 kb on + strand at 204.184 kb on - strand at 204.197 kb on + strand at 204.198 kb on - strand at 204.210 kb on + strand at 204.211 kb on - strand at 204.398 kb on + strand at 204.398 kb on + strand at 204.399 kb on - strand at 204.464 kb on - strand, within GFF482 at 204.512 kb on + strand, within GFF482 at 204.663 kb on - strand at 204.701 kb on + strand at 204.704 kb on - strand at 204.789 kb on + strand, within GFF483 at 204.789 kb on + strand, within GFF483 at 204.798 kb on + strand, within GFF483 at 205.022 kb on + strand at 205.022 kb on + strand at 205.022 kb on + strand at 205.030 kb on - strand at 205.057 kb on - strand at 205.138 kb on - strand at 205.195 kb on - strand, within GFF484 at 205.195 kb on - strand, within GFF484 at 205.348 kb on + strand, within GFF484 at 205.349 kb on - strand, within GFF484 at 205.359 kb on + strand, within GFF484 at 205.430 kb on + strand, within GFF484 at 205.489 kb on - strand, within GFF484 at 205.566 kb on - strand, within GFF484 at 205.635 kb on + strand, within GFF484 at 205.635 kb on + strand, within GFF484 at 205.635 kb on + strand, within GFF484
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 203,824 + GFF480 0.75 -0.2 204,011 - GFF480 0.89 -0.0 204,147 + +0.3 204,184 - +0.3 204,197 + -0.1 204,198 - -0.1 204,210 + -0.4 204,211 - -0.3 204,398 + +0.1 204,398 + -0.3 204,399 - -0.1 204,464 - GFF482 0.24 -0.5 204,512 + GFF482 0.42 -0.3 204,663 - +0.6 204,701 + -0.5 204,704 - +0.1 204,789 + GFF483 0.17 +0.0 204,789 + GFF483 0.17 +0.4 204,798 + GFF483 0.24 -0.0 205,022 + +0.2 205,022 + +0.3 205,022 + +0.2 205,030 - +0.3 205,057 - +0.2 205,138 - +0.8 205,195 - GFF484 0.13 +0.8 205,195 - GFF484 0.13 +0.1 205,348 + GFF484 0.22 +0.4 205,349 - GFF484 0.22 -1.0 205,359 + GFF484 0.23 +0.1 205,430 + GFF484 0.27 -0.0 205,489 - GFF484 0.30 +0.5 205,566 - GFF484 0.35 -0.5 205,635 + GFF484 0.39 +0.1 205,635 + GFF484 0.39 +1.0 205,635 + GFF484 0.39 +1.1
Or see this region's nucleotide sequence