Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4763

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4762 and GFF4763 are separated by 24 nucleotidesGFF4763 and GFF4764 overlap by 4 nucleotides GFF4762 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 68,183 to 70,240 GFF4762 GFF4763 - Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE), at 70,265 to 71,383 GFF4763 GFF4764 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 71,380 to 72,924 GFF4764 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 69.391 kb on + strand, within GFF4762at 69.449 kb on - strand, within GFF4762at 69.491 kb on - strand, within GFF4762at 69.550 kb on + strand, within GFF4762at 69.551 kb on - strand, within GFF4762at 69.551 kb on - strand, within GFF4762at 69.553 kb on - strand, within GFF4762at 69.752 kb on - strand, within GFF4762at 69.752 kb on - strand, within GFF4762at 69.800 kb on - strand, within GFF4762at 69.883 kb on + strand, within GFF4762at 70.071 kb on + strandat 70.209 kb on - strandat 70.334 kb on - strandat 70.334 kb on - strandat 70.530 kb on - strand, within GFF4763at 70.601 kb on + strand, within GFF4763at 70.753 kb on - strand, within GFF4763at 70.753 kb on - strand, within GFF4763at 70.753 kb on - strand, within GFF4763at 70.829 kb on + strand, within GFF4763at 71.009 kb on + strand, within GFF4763at 71.010 kb on - strand, within GFF4763at 71.010 kb on - strand, within GFF4763at 71.076 kb on - strand, within GFF4763at 71.084 kb on + strand, within GFF4763at 71.302 kb on + strandat 71.302 kb on + strandat 71.302 kb on + strandat 71.302 kb on + strandat 71.431 kb on + strandat 71.566 kb on - strand, within GFF4764at 71.592 kb on + strand, within GFF4764at 71.704 kb on - strand, within GFF4764at 71.738 kb on - strand, within GFF4764at 71.748 kb on + strand, within GFF4764at 71.748 kb on + strand, within GFF4764at 71.748 kb on + strand, within GFF4764at 71.803 kb on + strand, within GFF4764at 71.804 kb on - strand, within GFF4764at 71.852 kb on + strand, within GFF4764at 71.852 kb on + strand, within GFF4764at 71.852 kb on + strand, within GFF4764at 71.857 kb on + strand, within GFF4764at 71.857 kb on + strand, within GFF4764at 71.857 kb on + strand, within GFF4764at 71.858 kb on - strand, within GFF4764at 71.877 kb on + strand, within GFF4764at 71.877 kb on + strand, within GFF4764at 71.877 kb on + strand, within GFF4764at 71.877 kb on + strand, within GFF4764at 71.878 kb on - strand, within GFF4764at 71.878 kb on - strand, within GFF4764at 71.878 kb on - strand, within GFF4764at 72.037 kb on + strand, within GFF4764at 72.078 kb on + strand, within GFF4764at 72.083 kb on - strand, within GFF4764at 72.083 kb on - strand, within GFF4764at 72.270 kb on + strand, within GFF4764at 72.271 kb on - strand, within GFF4764

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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69,391 + GFF4762 0.59 -0.4
69,449 - GFF4762 0.62 -0.1
69,491 - GFF4762 0.64 +0.1
69,550 + GFF4762 0.66 -0.5
69,551 - GFF4762 0.66 -0.8
69,551 - GFF4762 0.66 -0.3
69,553 - GFF4762 0.67 -1.2
69,752 - GFF4762 0.76 -0.5
69,752 - GFF4762 0.76 +0.3
69,800 - GFF4762 0.79 +0.7
69,883 + GFF4762 0.83 -0.3
70,071 + +0.5
70,209 - +0.6
70,334 - +0.3
70,334 - -0.5
70,530 - GFF4763 0.24 -0.7
70,601 + GFF4763 0.30 +0.2
70,753 - GFF4763 0.44 +0.3
70,753 - GFF4763 0.44 +0.6
70,753 - GFF4763 0.44 +1.6
70,829 + GFF4763 0.50 +0.1
71,009 + GFF4763 0.66 -0.1
71,010 - GFF4763 0.67 +0.9
71,010 - GFF4763 0.67 +1.0
71,076 - GFF4763 0.72 -0.3
71,084 + GFF4763 0.73 +1.0
71,302 + +0.5
71,302 + +0.3
71,302 + +1.1
71,302 + +0.1
71,431 + -0.6
71,566 - GFF4764 0.12 +0.3
71,592 + GFF4764 0.14 +0.3
71,704 - GFF4764 0.21 +0.8
71,738 - GFF4764 0.23 -1.0
71,748 + GFF4764 0.24 -0.4
71,748 + GFF4764 0.24 -0.2
71,748 + GFF4764 0.24 -0.7
71,803 + GFF4764 0.27 +0.3
71,804 - GFF4764 0.27 +0.8
71,852 + GFF4764 0.31 +0.4
71,852 + GFF4764 0.31 +0.1
71,852 + GFF4764 0.31 -1.7
71,857 + GFF4764 0.31 -0.7
71,857 + GFF4764 0.31 -0.5
71,857 + GFF4764 0.31 -1.0
71,858 - GFF4764 0.31 -0.4
71,877 + GFF4764 0.32 +1.0
71,877 + GFF4764 0.32 +0.1
71,877 + GFF4764 0.32 -0.7
71,877 + GFF4764 0.32 +0.0
71,878 - GFF4764 0.32 -0.9
71,878 - GFF4764 0.32 +1.3
71,878 - GFF4764 0.32 -1.2
72,037 + GFF4764 0.43 -0.1
72,078 + GFF4764 0.45 +0.0
72,083 - GFF4764 0.46 -0.3
72,083 - GFF4764 0.46 -2.6
72,270 + GFF4764 0.58 -0.1
72,271 - GFF4764 0.58 -0.3

Or see this region's nucleotide sequence