Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4758 and GFF4759 overlap by 1 nucleotides GFF4759 and GFF4760 overlap by 23 nucleotides GFF4760 and GFF4761 overlap by 4 nucleotides GFF4761 and GFF4762 are separated by 23 nucleotides
GFF4758 - Type III secretion host injection and negative regulator protein (YopD), at 65,029 to 66,039
GFF4758
GFF4759 - Surface presentation of antigens protein SpaM, at 66,039 to 66,482
GFF4759
GFF4760 - Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN), at 66,460 to 67,755
GFF4760
GFF4761 - Type III secretion system protein BsaR, at 67,752 to 68,159
GFF4761
GFF4762 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 68,183 to 70,240
GFF4762
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1 at 65.526 kb on + strand, within GFF4758 at 65.551 kb on - strand, within GFF4758 at 65.585 kb on - strand, within GFF4758 at 65.639 kb on - strand, within GFF4758 at 66.092 kb on - strand, within GFF4759 at 66.268 kb on - strand, within GFF4759 at 66.456 kb on + strand at 66.457 kb on - strand at 66.716 kb on - strand, within GFF4760 at 66.777 kb on - strand, within GFF4760 at 66.855 kb on - strand, within GFF4760 at 67.049 kb on + strand, within GFF4760 at 67.161 kb on + strand, within GFF4760 at 67.162 kb on - strand, within GFF4760 at 67.319 kb on - strand, within GFF4760 at 67.380 kb on - strand, within GFF4760 at 67.527 kb on - strand, within GFF4760 at 67.594 kb on + strand, within GFF4760 at 67.595 kb on - strand, within GFF4760 at 67.696 kb on - strand at 67.730 kb on + strand at 67.731 kb on - strand at 67.860 kb on - strand, within GFF4761 at 67.962 kb on + strand, within GFF4761 at 68.005 kb on - strand, within GFF4761 at 68.160 kb on - strand at 68.305 kb on + strand at 68.336 kb on + strand at 68.350 kb on + strand at 68.533 kb on + strand, within GFF4762 at 68.656 kb on + strand, within GFF4762
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 65,526 + GFF4758 0.49 -0.1 65,551 - GFF4758 0.52 +0.2 65,585 - GFF4758 0.55 -1.1 65,639 - GFF4758 0.60 -0.7 66,092 - GFF4759 0.12 -0.9 66,268 - GFF4759 0.52 -0.1 66,456 + -0.4 66,457 - +0.0 66,716 - GFF4760 0.20 -0.3 66,777 - GFF4760 0.24 -0.2 66,855 - GFF4760 0.30 -0.7 67,049 + GFF4760 0.45 -0.1 67,161 + GFF4760 0.54 +0.7 67,162 - GFF4760 0.54 +0.0 67,319 - GFF4760 0.66 -0.8 67,380 - GFF4760 0.71 +0.2 67,527 - GFF4760 0.82 -0.7 67,594 + GFF4760 0.88 +0.0 67,595 - GFF4760 0.88 -0.4 67,696 - -0.2 67,730 + -0.3 67,731 - -0.2 67,860 - GFF4761 0.26 -0.6 67,962 + GFF4761 0.51 -0.5 68,005 - GFF4761 0.62 +0.3 68,160 - -0.1 68,305 + -1.8 68,336 + +0.6 68,350 + +0.5 68,533 + GFF4762 0.17 +0.1 68,656 + GFF4762 0.23 +0.8
Or see this region's nucleotide sequence