Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4756 and GFF4757 overlap by 11 nucleotides GFF4757 and GFF4758 overlap by 1 nucleotides GFF4758 and GFF4759 overlap by 1 nucleotides GFF4759 and GFF4760 overlap by 23 nucleotides
GFF4756 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 63,454 to 64,128
GFF4756
GFF4757 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components); Surface presentation of antigens protein SpaO, at 64,118 to 65,029
GFF4757
GFF4758 - Type III secretion host injection and negative regulator protein (YopD), at 65,029 to 66,039
GFF4758
GFF4759 - Surface presentation of antigens protein SpaM, at 66,039 to 66,482
GFF4759
GFF4760 - Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN), at 66,460 to 67,755
GFF4760
Position (kb) 65
66
67 Strain fitness (log2 ratio) -1
0
1 at 64.509 kb on - strand, within GFF4757 at 64.721 kb on + strand, within GFF4757 at 65.164 kb on - strand, within GFF4758 at 65.219 kb on + strand, within GFF4758 at 65.247 kb on - strand, within GFF4758 at 65.259 kb on + strand, within GFF4758 at 65.260 kb on - strand, within GFF4758 at 65.415 kb on + strand, within GFF4758 at 65.425 kb on - strand, within GFF4758 at 65.526 kb on + strand, within GFF4758 at 65.551 kb on - strand, within GFF4758 at 65.585 kb on - strand, within GFF4758 at 65.639 kb on - strand, within GFF4758 at 66.092 kb on - strand, within GFF4759 at 66.268 kb on - strand, within GFF4759 at 66.456 kb on + strand at 66.457 kb on - strand at 66.716 kb on - strand, within GFF4760 at 66.777 kb on - strand, within GFF4760 at 66.855 kb on - strand, within GFF4760
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 64,509 - GFF4757 0.43 +0.2 64,721 + GFF4757 0.66 -0.3 65,164 - GFF4758 0.13 +0.0 65,219 + GFF4758 0.19 -0.1 65,247 - GFF4758 0.22 -0.9 65,259 + GFF4758 0.23 -0.7 65,260 - GFF4758 0.23 +0.1 65,415 + GFF4758 0.38 +0.3 65,425 - GFF4758 0.39 +0.1 65,526 + GFF4758 0.49 -0.1 65,551 - GFF4758 0.52 +0.2 65,585 - GFF4758 0.55 -1.1 65,639 - GFF4758 0.60 -0.7 66,092 - GFF4759 0.12 -0.9 66,268 - GFF4759 0.52 -0.1 66,456 + -0.4 66,457 - +0.0 66,716 - GFF4760 0.20 -0.3 66,777 - GFF4760 0.24 -0.2 66,855 - GFF4760 0.30 -0.7
Or see this region's nucleotide sequence