Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4751 and GFF4752 are separated by 2 nucleotides GFF4752 and GFF4753 are separated by 137 nucleotides
GFF4751 - cell invasion protein SipB, at 58,897 to 60,678
GFF4751
GFF4752 - Type III secretion chaperone protein for YopD (SycD), at 60,681 to 61,178
GFF4752
GFF4753 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 61,316 to 62,386
GFF4753
Position (kb) 60
61
62 Strain fitness (log2 ratio) -1
0
1 at 59.704 kb on + strand, within GFF4751 at 59.739 kb on + strand, within GFF4751 at 60.048 kb on + strand, within GFF4751 at 60.069 kb on + strand, within GFF4751 at 60.070 kb on - strand, within GFF4751 at 60.070 kb on - strand, within GFF4751 at 60.073 kb on + strand, within GFF4751 at 60.116 kb on - strand, within GFF4751 at 60.395 kb on - strand, within GFF4751 at 60.403 kb on + strand, within GFF4751 at 60.403 kb on + strand, within GFF4751 at 60.403 kb on + strand, within GFF4751 at 60.404 kb on - strand, within GFF4751 at 60.640 kb on - strand at 60.821 kb on + strand, within GFF4752 at 60.939 kb on + strand, within GFF4752 at 60.940 kb on - strand, within GFF4752 at 61.060 kb on - strand, within GFF4752 at 61.074 kb on - strand, within GFF4752 at 61.164 kb on - strand at 61.184 kb on - strand at 61.210 kb on + strand at 61.301 kb on - strand at 61.309 kb on - strand at 61.510 kb on - strand, within GFF4753 at 61.802 kb on + strand, within GFF4753 at 61.806 kb on - strand, within GFF4753 at 61.919 kb on - strand, within GFF4753 at 62.132 kb on - strand, within GFF4753
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 59,704 + GFF4751 0.45 +0.3 59,739 + GFF4751 0.47 -0.4 60,048 + GFF4751 0.65 -0.3 60,069 + GFF4751 0.66 -0.4 60,070 - GFF4751 0.66 +0.4 60,070 - GFF4751 0.66 -0.4 60,073 + GFF4751 0.66 -0.0 60,116 - GFF4751 0.68 +1.6 60,395 - GFF4751 0.84 -1.2 60,403 + GFF4751 0.85 +0.1 60,403 + GFF4751 0.85 +0.2 60,403 + GFF4751 0.85 +0.7 60,404 - GFF4751 0.85 -0.1 60,640 - -0.0 60,821 + GFF4752 0.28 -0.3 60,939 + GFF4752 0.52 -0.5 60,940 - GFF4752 0.52 +0.2 61,060 - GFF4752 0.76 -0.6 61,074 - GFF4752 0.79 -1.0 61,164 - -0.8 61,184 - +0.3 61,210 + +0.1 61,301 - +0.6 61,309 - -0.2 61,510 - GFF4753 0.18 +1.6 61,802 + GFF4753 0.45 +0.1 61,806 - GFF4753 0.46 -0.5 61,919 - GFF4753 0.56 -0.3 62,132 - GFF4753 0.76 +0.0
Or see this region's nucleotide sequence