Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4737 and GFF4738 overlap by 4 nucleotides GFF4738 and GFF4739 are separated by 81 nucleotides GFF4739 and GFF4740 are separated by 24 nucleotides
GFF4737 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 44,779 to 45,537
GFF4737
GFF4738 - Type III secretion system protein, at 45,534 to 45,776
GFF4738
GFF4739 - PrgI protein, at 45,858 to 46,100
GFF4739
GFF4740 - MxiG protein; Pathogenicity 1 island effector protein, at 46,125 to 47,189
GFF4740
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 45.000 kb on - strand, within GFF4737 at 45.078 kb on - strand, within GFF4737 at 45.079 kb on + strand, within GFF4737 at 45.080 kb on - strand, within GFF4737 at 45.144 kb on - strand, within GFF4737 at 45.147 kb on + strand, within GFF4737 at 45.147 kb on + strand, within GFF4737 at 45.148 kb on - strand, within GFF4737 at 45.223 kb on + strand, within GFF4737 at 45.314 kb on + strand, within GFF4737 at 45.329 kb on + strand, within GFF4737 at 45.370 kb on - strand, within GFF4737 at 45.408 kb on + strand, within GFF4737 at 45.442 kb on - strand, within GFF4737 at 45.518 kb on + strand at 45.520 kb on + strand at 45.521 kb on - strand at 45.544 kb on - strand at 45.611 kb on - strand, within GFF4738 at 45.686 kb on + strand, within GFF4738 at 45.825 kb on - strand at 45.840 kb on - strand at 45.851 kb on + strand at 45.891 kb on - strand, within GFF4739 at 45.907 kb on - strand, within GFF4739 at 46.021 kb on - strand, within GFF4739 at 46.032 kb on + strand, within GFF4739 at 46.033 kb on - strand, within GFF4739 at 46.116 kb on + strand at 46.145 kb on - strand at 46.244 kb on - strand, within GFF4740 at 46.244 kb on - strand, within GFF4740 at 46.267 kb on + strand, within GFF4740 at 46.267 kb on + strand, within GFF4740 at 46.268 kb on - strand, within GFF4740 at 46.272 kb on - strand, within GFF4740 at 46.302 kb on + strand, within GFF4740 at 46.346 kb on + strand, within GFF4740 at 46.364 kb on - strand, within GFF4740 at 46.588 kb on + strand, within GFF4740 at 46.588 kb on + strand, within GFF4740 at 46.610 kb on + strand, within GFF4740 at 46.695 kb on - strand, within GFF4740 at 46.695 kb on - strand, within GFF4740 at 46.721 kb on - strand, within GFF4740 at 47.007 kb on + strand, within GFF4740
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 45,000 - GFF4737 0.29 +0.6 45,078 - GFF4737 0.39 +0.2 45,079 + GFF4737 0.40 -0.2 45,080 - GFF4737 0.40 +0.2 45,144 - GFF4737 0.48 -0.5 45,147 + GFF4737 0.48 +0.1 45,147 + GFF4737 0.48 +0.1 45,148 - GFF4737 0.49 -0.8 45,223 + GFF4737 0.58 -0.5 45,314 + GFF4737 0.70 -0.5 45,329 + GFF4737 0.72 +0.1 45,370 - GFF4737 0.78 -3.3 45,408 + GFF4737 0.83 -0.5 45,442 - GFF4737 0.87 +0.4 45,518 + -0.2 45,520 + +0.1 45,521 - -0.2 45,544 - -0.2 45,611 - GFF4738 0.32 -0.7 45,686 + GFF4738 0.63 +0.2 45,825 - +0.4 45,840 - +0.3 45,851 + -0.3 45,891 - GFF4739 0.14 -0.4 45,907 - GFF4739 0.20 +0.1 46,021 - GFF4739 0.67 -0.6 46,032 + GFF4739 0.72 -0.4 46,033 - GFF4739 0.72 -0.2 46,116 + -0.0 46,145 - -0.4 46,244 - GFF4740 0.11 -0.4 46,244 - GFF4740 0.11 -0.1 46,267 + GFF4740 0.13 -0.3 46,267 + GFF4740 0.13 +0.1 46,268 - GFF4740 0.13 +0.3 46,272 - GFF4740 0.14 +0.5 46,302 + GFF4740 0.17 -0.5 46,346 + GFF4740 0.21 +0.2 46,364 - GFF4740 0.22 +0.5 46,588 + GFF4740 0.43 -1.0 46,588 + GFF4740 0.43 -0.6 46,610 + GFF4740 0.46 -0.2 46,695 - GFF4740 0.54 -0.1 46,695 - GFF4740 0.54 -0.2 46,721 - GFF4740 0.56 -0.2 47,007 + GFF4740 0.83 -2.0
Or see this region's nucleotide sequence