Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4709 and GFF4710 are separated by 26 nucleotides GFF4710 and GFF4711 overlap by 8 nucleotides GFF4711 and GFF4712 overlap by 4 nucleotides GFF4712 and GFF4713 overlap by 1 nucleotides
GFF4709 - Putative periplasmic or exported protein, at 20,649 to 21,458
GFF4709
GFF4710 - Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-), at 21,485 to 21,955
GFF4710
GFF4711 - Formate hydrogenlyase maturation protein HycH, at 21,948 to 22,358
GFF4711
GFF4712 - Formate hydrogenlyase subunit 7, at 22,355 to 23,122
GFF4712
GFF4713 - Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit, at 23,122 to 23,664
GFF4713
Position (kb) 21
22
23 Strain fitness (log2 ratio) -1
0
1 at 21.022 kb on + strand, within GFF4709 at 21.023 kb on - strand, within GFF4709 at 21.023 kb on - strand, within GFF4709 at 21.286 kb on + strand, within GFF4709 at 21.400 kb on - strand at 21.437 kb on + strand at 21.438 kb on - strand at 21.474 kb on - strand at 21.474 kb on - strand at 21.550 kb on - strand, within GFF4710 at 21.665 kb on - strand, within GFF4710 at 21.670 kb on - strand, within GFF4710 at 21.670 kb on - strand, within GFF4710 at 21.670 kb on - strand, within GFF4710 at 21.670 kb on - strand, within GFF4710 at 21.670 kb on - strand, within GFF4710 at 21.682 kb on + strand, within GFF4710 at 21.752 kb on - strand, within GFF4710 at 21.942 kb on - strand at 22.004 kb on - strand, within GFF4711 at 22.010 kb on + strand, within GFF4711 at 22.124 kb on - strand, within GFF4711 at 22.193 kb on - strand, within GFF4711 at 22.316 kb on + strand, within GFF4711 at 22.480 kb on - strand, within GFF4712 at 22.480 kb on - strand, within GFF4712 at 22.701 kb on + strand, within GFF4712 at 22.701 kb on + strand, within GFF4712 at 22.701 kb on + strand, within GFF4712 at 22.702 kb on - strand, within GFF4712 at 22.796 kb on - strand, within GFF4712 at 22.978 kb on + strand, within GFF4712 at 22.979 kb on - strand, within GFF4712 at 23.191 kb on - strand, within GFF4713 at 23.270 kb on + strand, within GFF4713
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 21,022 + GFF4709 0.46 +0.4 21,023 - GFF4709 0.46 -0.6 21,023 - GFF4709 0.46 -0.1 21,286 + GFF4709 0.79 +0.1 21,400 - +0.2 21,437 + -0.0 21,438 - -1.1 21,474 - +0.3 21,474 - -0.7 21,550 - GFF4710 0.14 +0.8 21,665 - GFF4710 0.38 -0.0 21,670 - GFF4710 0.39 +0.1 21,670 - GFF4710 0.39 -0.1 21,670 - GFF4710 0.39 -0.0 21,670 - GFF4710 0.39 +0.0 21,670 - GFF4710 0.39 +0.8 21,682 + GFF4710 0.42 -0.6 21,752 - GFF4710 0.57 +1.3 21,942 - -0.2 22,004 - GFF4711 0.14 +0.1 22,010 + GFF4711 0.15 +0.1 22,124 - GFF4711 0.43 -0.1 22,193 - GFF4711 0.60 -0.5 22,316 + GFF4711 0.90 -0.9 22,480 - GFF4712 0.16 -0.0 22,480 - GFF4712 0.16 +0.1 22,701 + GFF4712 0.45 -0.6 22,701 + GFF4712 0.45 -0.2 22,701 + GFF4712 0.45 +0.3 22,702 - GFF4712 0.45 -0.4 22,796 - GFF4712 0.57 +0.2 22,978 + GFF4712 0.81 -0.2 22,979 - GFF4712 0.81 -0.2 23,191 - GFF4713 0.13 +0.8 23,270 + GFF4713 0.27 +0.4
Or see this region's nucleotide sequence