Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4640 and GFF4641 are separated by 141 nucleotides GFF4641 and GFF4642 overlap by 1 nucleotides GFF4642 and GFF4643 are separated by 28 nucleotides
GFF4640 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 435,105 to 436,313
GFF4640
GFF4641 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 436,455 to 437,621
GFF4641
GFF4642 - Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5), at 437,621 to 438,490
GFF4642
GFF4643 - hypothetical protein, at 438,519 to 438,644
GFF4643
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 435.882 kb on + strand, within GFF4640 at 436.334 kb on + strand at 436.382 kb on - strand at 436.463 kb on - strand at 436.522 kb on - strand at 436.529 kb on + strand at 436.529 kb on + strand at 436.704 kb on + strand, within GFF4641 at 437.064 kb on - strand, within GFF4641 at 437.283 kb on - strand, within GFF4641 at 437.367 kb on - strand, within GFF4641 at 437.620 kb on - strand at 437.636 kb on - strand at 437.645 kb on - strand at 438.095 kb on + strand, within GFF4642 at 438.096 kb on - strand, within GFF4642 at 438.572 kb on + strand, within GFF4643
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 435,882 + GFF4640 0.64 -1.4 436,334 + -1.2 436,382 - -0.5 436,463 - -1.0 436,522 - -1.8 436,529 + -1.5 436,529 + -3.3 436,704 + GFF4641 0.21 -0.7 437,064 - GFF4641 0.52 -0.6 437,283 - GFF4641 0.71 -3.4 437,367 - GFF4641 0.78 -1.5 437,620 - -1.1 437,636 - -1.6 437,645 - -1.6 438,095 + GFF4642 0.54 -1.4 438,096 - GFF4642 0.55 -3.3 438,572 + GFF4643 0.42 +0.1
Or see this region's nucleotide sequence