Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4528 and GFF4529 overlap by 4 nucleotides GFF4529 and GFF4530 overlap by 4 nucleotides GFF4530 and GFF4531 are separated by 210 nucleotides GFF4531 and GFF4532 are separated by 9 nucleotides
GFF4528 - Citrate lyase beta chain (EC 4.1.3.6), at 315,582 to 316,490
GFF4528
GFF4529 - Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6), at 316,487 to 316,783
GFF4529
GFF4530 - [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22), at 316,780 to 317,856
GFF4530
GFF4531 - FIG01046674: hypothetical protein, at 318,067 to 318,231
GFF4531
GFF4532 - Sensor kinase CitA, DpiB (EC 2.7.3.-), at 318,241 to 319,902
GFF4532
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1 at 315.806 kb on + strand, within GFF4528 at 315.806 kb on + strand, within GFF4528 at 315.807 kb on - strand, within GFF4528 at 315.807 kb on - strand, within GFF4528 at 315.992 kb on - strand, within GFF4528 at 315.992 kb on - strand, within GFF4528 at 316.315 kb on - strand, within GFF4528 at 316.395 kb on - strand, within GFF4528 at 316.442 kb on + strand at 316.443 kb on - strand at 316.465 kb on - strand at 316.766 kb on + strand at 317.045 kb on + strand, within GFF4530 at 317.178 kb on + strand, within GFF4530 at 317.186 kb on + strand, within GFF4530 at 317.212 kb on - strand, within GFF4530 at 317.307 kb on + strand, within GFF4530 at 317.308 kb on - strand, within GFF4530 at 317.409 kb on + strand, within GFF4530 at 317.410 kb on - strand, within GFF4530 at 317.410 kb on - strand, within GFF4530 at 317.410 kb on - strand, within GFF4530 at 317.492 kb on - strand, within GFF4530 at 317.556 kb on - strand, within GFF4530 at 318.358 kb on + strand at 318.529 kb on + strand, within GFF4532 at 318.641 kb on - strand, within GFF4532 at 318.694 kb on - strand, within GFF4532 at 318.751 kb on - strand, within GFF4532 at 318.822 kb on - strand, within GFF4532
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 315,806 + GFF4528 0.25 -0.8 315,806 + GFF4528 0.25 -0.9 315,807 - GFF4528 0.25 +0.0 315,807 - GFF4528 0.25 -0.1 315,992 - GFF4528 0.45 +0.5 315,992 - GFF4528 0.45 +0.1 316,315 - GFF4528 0.81 +0.3 316,395 - GFF4528 0.89 -0.4 316,442 + +0.7 316,443 - +0.1 316,465 - -0.7 316,766 + -0.5 317,045 + GFF4530 0.25 -0.5 317,178 + GFF4530 0.37 -0.0 317,186 + GFF4530 0.38 -0.4 317,212 - GFF4530 0.40 +0.3 317,307 + GFF4530 0.49 -0.3 317,308 - GFF4530 0.49 -0.2 317,409 + GFF4530 0.58 -0.1 317,410 - GFF4530 0.58 -0.2 317,410 - GFF4530 0.58 -0.2 317,410 - GFF4530 0.58 -1.9 317,492 - GFF4530 0.66 -0.4 317,556 - GFF4530 0.72 +0.5 318,358 + +0.5 318,529 + GFF4532 0.17 +0.1 318,641 - GFF4532 0.24 +0.0 318,694 - GFF4532 0.27 -0.4 318,751 - GFF4532 0.31 -0.8 318,822 - GFF4532 0.35 -1.4
Or see this region's nucleotide sequence