Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4502 and GFF4503 overlap by 1 nucleotides GFF4503 and GFF4504 are separated by 2 nucleotides GFF4504 and GFF4505 are separated by 181 nucleotides
GFF4502 - Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis, at 289,278 to 290,135
GFF4502
GFF4503 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis, at 290,135 to 290,890
GFF4503
GFF4504 - Proofreading thioesterase in enterobactin biosynthesis EntH, at 290,893 to 291,306
GFF4504
GFF4505 - Carbon starvation protein A, at 291,488 to 293,593
GFF4505
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1
2 at 290.015 kb on - strand, within GFF4502 at 290.051 kb on - strand at 290.133 kb on + strand at 290.386 kb on + strand, within GFF4503 at 290.548 kb on + strand, within GFF4503 at 290.563 kb on + strand, within GFF4503 at 290.584 kb on + strand, within GFF4503 at 290.651 kb on - strand, within GFF4503 at 290.842 kb on + strand at 290.842 kb on + strand at 290.843 kb on - strand at 290.974 kb on + strand, within GFF4504 at 290.975 kb on - strand, within GFF4504 at 291.103 kb on + strand, within GFF4504 at 291.296 kb on + strand at 291.376 kb on - strand at 291.439 kb on + strand at 291.439 kb on + strand at 291.439 kb on + strand at 291.439 kb on + strand at 291.493 kb on + strand at 291.494 kb on - strand at 291.506 kb on + strand at 291.554 kb on + strand at 291.557 kb on - strand at 291.557 kb on - strand at 291.557 kb on - strand at 291.620 kb on + strand at 291.620 kb on + strand at 291.621 kb on - strand at 291.626 kb on - strand at 291.650 kb on + strand at 291.651 kb on - strand at 291.652 kb on + strand at 291.688 kb on + strand at 291.689 kb on - strand at 291.709 kb on + strand, within GFF4505 at 291.725 kb on + strand, within GFF4505 at 291.886 kb on + strand, within GFF4505 at 292.067 kb on + strand, within GFF4505 at 292.067 kb on + strand, within GFF4505 at 292.067 kb on + strand, within GFF4505 at 292.068 kb on - strand, within GFF4505 at 292.113 kb on - strand, within GFF4505 at 292.186 kb on + strand, within GFF4505 at 292.230 kb on - strand, within GFF4505 at 292.274 kb on + strand, within GFF4505
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 290,015 - GFF4502 0.86 -0.2 290,051 - -1.2 290,133 + -0.5 290,386 + GFF4503 0.33 -0.0 290,548 + GFF4503 0.55 +0.0 290,563 + GFF4503 0.57 -0.0 290,584 + GFF4503 0.59 -0.0 290,651 - GFF4503 0.68 +0.4 290,842 + +0.0 290,842 + -0.2 290,843 - -0.3 290,974 + GFF4504 0.20 -0.0 290,975 - GFF4504 0.20 -0.0 291,103 + GFF4504 0.51 +0.2 291,296 + +0.2 291,376 - +0.3 291,439 + -0.3 291,439 + +0.1 291,439 + +0.1 291,439 + +0.1 291,493 + -0.1 291,494 - +0.8 291,506 + +0.8 291,554 + -0.2 291,557 - +0.5 291,557 - +0.0 291,557 - +0.1 291,620 + -1.0 291,620 + -0.0 291,621 - +0.2 291,626 - -1.0 291,650 + -0.1 291,651 - +1.8 291,652 + -0.2 291,688 + -0.4 291,689 - +0.6 291,709 + GFF4505 0.10 +0.1 291,725 + GFF4505 0.11 +0.4 291,886 + GFF4505 0.19 +1.1 292,067 + GFF4505 0.27 +0.0 292,067 + GFF4505 0.27 -0.1 292,067 + GFF4505 0.27 +0.7 292,068 - GFF4505 0.28 +0.0 292,113 - GFF4505 0.30 -1.7 292,186 + GFF4505 0.33 +0.0 292,230 - GFF4505 0.35 -0.4 292,274 + GFF4505 0.37 -0.2
Or see this region's nucleotide sequence