Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4484 and GFF4485 are separated by 288 nucleotides GFF4485 and GFF4486 are separated by 5 nucleotides GFF4486 and GFF4487 are separated by 90 nucleotides GFF4487 and GFF4488 are separated by 11 nucleotides GFF4488 and GFF4489 are separated by 45 nucleotides
GFF4484 - Transcriptional regulator, TetR family, at 268,360 to 268,941
GFF4484
GFF4485 - Transcriptional activator RamA, at 269,230 to 269,571
GFF4485
GFF4486 - Putative inner membrane protein, at 269,577 to 269,801
GFF4486
GFF4487 - FIG00638355: hypothetical protein, at 269,892 to 271,010
GFF4487
GFF4488 - '4'-phosphopantetheinyl transferase (EC 2.7.8.-) [enterobactin] siderophore' transl_table=11, at 271,022 to 271,726
GFF4488
GFF4489 - TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D, at 271,772 to 274,027
GFF4489
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -2
-1
0
1 at 269.040 kb on - strand at 269.101 kb on + strand at 269.157 kb on - strand at 269.166 kb on - strand at 269.281 kb on - strand, within GFF4485 at 269.298 kb on - strand, within GFF4485 at 269.311 kb on - strand, within GFF4485 at 269.358 kb on + strand, within GFF4485 at 269.365 kb on + strand, within GFF4485 at 269.366 kb on - strand, within GFF4485 at 269.408 kb on + strand, within GFF4485 at 269.409 kb on - strand, within GFF4485 at 269.457 kb on + strand, within GFF4485 at 269.457 kb on + strand, within GFF4485 at 269.884 kb on + strand at 269.884 kb on + strand at 269.885 kb on - strand at 269.934 kb on + strand at 269.972 kb on - strand at 270.080 kb on + strand, within GFF4487 at 270.081 kb on - strand, within GFF4487 at 270.081 kb on - strand, within GFF4487 at 270.112 kb on + strand, within GFF4487 at 270.171 kb on - strand, within GFF4487 at 270.255 kb on - strand, within GFF4487 at 270.303 kb on + strand, within GFF4487 at 270.373 kb on + strand, within GFF4487 at 270.501 kb on - strand, within GFF4487 at 270.502 kb on + strand, within GFF4487 at 270.527 kb on + strand, within GFF4487 at 270.634 kb on - strand, within GFF4487 at 270.634 kb on - strand, within GFF4487 at 270.637 kb on + strand, within GFF4487 at 270.674 kb on + strand, within GFF4487 at 270.777 kb on - strand, within GFF4487 at 270.840 kb on - strand, within GFF4487 at 270.851 kb on + strand, within GFF4487 at 270.852 kb on - strand, within GFF4487 at 270.922 kb on - strand at 270.928 kb on + strand at 270.974 kb on + strand at 270.975 kb on - strand at 270.975 kb on - strand at 271.043 kb on + strand at 271.043 kb on + strand at 271.044 kb on - strand at 271.044 kb on - strand at 271.045 kb on + strand at 271.099 kb on + strand, within GFF4488 at 271.102 kb on + strand, within GFF4488 at 271.103 kb on - strand, within GFF4488 at 271.108 kb on + strand, within GFF4488 at 271.141 kb on + strand, within GFF4488 at 271.142 kb on - strand, within GFF4488 at 271.182 kb on - strand, within GFF4488 at 271.261 kb on + strand, within GFF4488 at 271.355 kb on - strand, within GFF4488 at 271.544 kb on + strand, within GFF4488 at 271.591 kb on - strand, within GFF4488 at 271.629 kb on - strand, within GFF4488 at 271.786 kb on + strand at 271.786 kb on + strand at 271.787 kb on - strand at 271.796 kb on - strand at 271.797 kb on + strand at 271.797 kb on + strand at 271.805 kb on - strand at 271.805 kb on - strand at 271.805 kb on - strand at 271.805 kb on - strand at 271.805 kb on - strand at 271.821 kb on + strand at 271.821 kb on + strand at 271.822 kb on - strand at 271.822 kb on - strand at 271.846 kb on + strand at 271.848 kb on + strand at 271.849 kb on - strand at 271.918 kb on + strand at 271.981 kb on + strand at 271.982 kb on - strand at 271.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 269,040 - +0.2 269,101 + -0.1 269,157 - -0.0 269,166 - +0.3 269,281 - GFF4485 0.15 -0.4 269,298 - GFF4485 0.20 -2.2 269,311 - GFF4485 0.24 -0.1 269,358 + GFF4485 0.37 -0.4 269,365 + GFF4485 0.39 -1.0 269,366 - GFF4485 0.40 +0.2 269,408 + GFF4485 0.52 -0.5 269,409 - GFF4485 0.52 +0.2 269,457 + GFF4485 0.66 -0.1 269,457 + GFF4485 0.66 -0.0 269,884 + +0.3 269,884 + -0.2 269,885 - +0.1 269,934 + +0.4 269,972 - +0.2 270,080 + GFF4487 0.17 -0.8 270,081 - GFF4487 0.17 +0.3 270,081 - GFF4487 0.17 +0.4 270,112 + GFF4487 0.20 -0.3 270,171 - GFF4487 0.25 +1.5 270,255 - GFF4487 0.32 +0.1 270,303 + GFF4487 0.37 +0.0 270,373 + GFF4487 0.43 -1.4 270,501 - GFF4487 0.54 -0.2 270,502 + GFF4487 0.55 -0.2 270,527 + GFF4487 0.57 +0.7 270,634 - GFF4487 0.66 +0.3 270,634 - GFF4487 0.66 -0.2 270,637 + GFF4487 0.67 -0.0 270,674 + GFF4487 0.70 +0.1 270,777 - GFF4487 0.79 -0.1 270,840 - GFF4487 0.85 +1.0 270,851 + GFF4487 0.86 +0.4 270,852 - GFF4487 0.86 +0.8 270,922 - +0.5 270,928 + +0.2 270,974 + -0.0 270,975 - -0.3 270,975 - -0.1 271,043 + -0.1 271,043 + +0.2 271,044 - -1.1 271,044 - +0.1 271,045 + -1.7 271,099 + GFF4488 0.11 +0.1 271,102 + GFF4488 0.11 -0.1 271,103 - GFF4488 0.11 -0.4 271,108 + GFF4488 0.12 -0.3 271,141 + GFF4488 0.17 -0.4 271,142 - GFF4488 0.17 +0.6 271,182 - GFF4488 0.23 -0.2 271,261 + GFF4488 0.34 +0.2 271,355 - GFF4488 0.47 -0.3 271,544 + GFF4488 0.74 -0.1 271,591 - GFF4488 0.81 +1.0 271,629 - GFF4488 0.86 +0.0 271,786 + +0.5 271,786 + -0.5 271,787 - +0.8 271,796 - +0.0 271,797 + +0.2 271,797 + +0.1 271,805 - +0.2 271,805 - -0.1 271,805 - +0.1 271,805 - +0.5 271,805 - -0.0 271,821 + +0.3 271,821 + +0.3 271,822 - +0.0 271,822 - +0.3 271,846 + +1.0 271,848 + +0.5 271,849 - -0.2 271,918 + -0.6 271,981 + +0.1 271,982 - -0.3 271,987 - +0.4
Or see this region's nucleotide sequence