Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4477 and GFF4478 are separated by 14 nucleotides GFF4478 and GFF4479 are separated by 2 nucleotides GFF4479 and GFF4480 are separated by 14 nucleotides GFF4480 and GFF4481 overlap by 23 nucleotides
GFF4477 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 263,454 to 264,515
GFF4477
GFF4478 - PTS system, mannose-specific IID component (EC 2.7.1.69), at 264,530 to 265,384
GFF4478
GFF4479 - PTS system, mannose-specific IIC component (EC 2.7.1.69), at 265,387 to 266,130
GFF4479
GFF4480 - PTS system, mannose-specific IIB component (EC 2.7.1.69), at 266,145 to 266,615
GFF4480
GFF4481 - PTS system, mannose-specific IIA component (EC 2.7.1.69), at 266,593 to 267,042
GFF4481
Position (kb) 265
266
267 Strain fitness (log2 ratio) -1
0
1 at 264.395 kb on + strand, within GFF4477 at 264.396 kb on - strand, within GFF4477 at 264.497 kb on + strand at 264.498 kb on - strand at 264.499 kb on + strand at 264.499 kb on + strand at 264.500 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.515 kb on + strand at 264.516 kb on - strand at 264.516 kb on - strand at 264.522 kb on - strand at 264.622 kb on - strand, within GFF4478 at 264.622 kb on - strand, within GFF4478 at 264.789 kb on + strand, within GFF4478 at 264.790 kb on - strand, within GFF4478 at 264.951 kb on + strand, within GFF4478 at 264.951 kb on + strand, within GFF4478 at 264.952 kb on - strand, within GFF4478 at 264.952 kb on - strand, within GFF4478 at 265.258 kb on - strand, within GFF4478 at 265.280 kb on - strand, within GFF4478 at 265.480 kb on - strand, within GFF4479 at 265.511 kb on + strand, within GFF4479 at 265.511 kb on + strand, within GFF4479 at 265.512 kb on - strand, within GFF4479 at 265.512 kb on - strand, within GFF4479 at 265.530 kb on + strand, within GFF4479 at 265.531 kb on - strand, within GFF4479 at 265.603 kb on - strand, within GFF4479 at 265.603 kb on - strand, within GFF4479 at 265.743 kb on + strand, within GFF4479 at 265.827 kb on + strand, within GFF4479 at 265.834 kb on - strand, within GFF4479 at 265.879 kb on - strand, within GFF4479 at 266.130 kb on + strand at 266.154 kb on - strand at 266.159 kb on + strand at 266.257 kb on + strand, within GFF4480 at 266.258 kb on - strand, within GFF4480 at 266.260 kb on - strand, within GFF4480 at 266.363 kb on + strand, within GFF4480 at 266.478 kb on + strand, within GFF4480 at 266.479 kb on - strand, within GFF4480 at 266.487 kb on - strand, within GFF4480 at 266.604 kb on + strand at 266.630 kb on - strand at 266.653 kb on + strand, within GFF4481 at 266.700 kb on - strand, within GFF4481 at 266.936 kb on + strand, within GFF4481 at 266.991 kb on + strand, within GFF4481 at 267.030 kb on - strand at 267.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 264,395 + GFF4477 0.89 -0.2 264,396 - GFF4477 0.89 -0.0 264,497 + -0.5 264,498 - -0.6 264,499 + +0.4 264,499 + +0.5 264,500 - +0.8 264,508 - +0.1 264,508 - -1.0 264,515 + -0.7 264,516 - +0.0 264,516 - +0.3 264,522 - -1.0 264,622 - GFF4478 0.11 +0.3 264,622 - GFF4478 0.11 -0.1 264,789 + GFF4478 0.30 +0.0 264,790 - GFF4478 0.30 -0.3 264,951 + GFF4478 0.49 +0.4 264,951 + GFF4478 0.49 -0.7 264,952 - GFF4478 0.49 -0.1 264,952 - GFF4478 0.49 -0.1 265,258 - GFF4478 0.85 -0.3 265,280 - GFF4478 0.88 -0.0 265,480 - GFF4479 0.12 +0.6 265,511 + GFF4479 0.17 +0.0 265,511 + GFF4479 0.17 -0.4 265,512 - GFF4479 0.17 +0.4 265,512 - GFF4479 0.17 +0.1 265,530 + GFF4479 0.19 +0.1 265,531 - GFF4479 0.19 +1.0 265,603 - GFF4479 0.29 +0.1 265,603 - GFF4479 0.29 +0.5 265,743 + GFF4479 0.48 +0.2 265,827 + GFF4479 0.59 +0.7 265,834 - GFF4479 0.60 +0.4 265,879 - GFF4479 0.66 +0.6 266,130 + +0.1 266,154 - +0.1 266,159 + -0.5 266,257 + GFF4480 0.24 +0.2 266,258 - GFF4480 0.24 -0.0 266,260 - GFF4480 0.24 -0.4 266,363 + GFF4480 0.46 -0.9 266,478 + GFF4480 0.71 +0.2 266,479 - GFF4480 0.71 -0.4 266,487 - GFF4480 0.73 -0.4 266,604 + +0.2 266,630 - -0.0 266,653 + GFF4481 0.13 +0.3 266,700 - GFF4481 0.24 +0.3 266,936 + GFF4481 0.76 +0.1 266,991 + GFF4481 0.88 -0.3 267,030 - +0.9 267,030 - +0.2
Or see this region's nucleotide sequence