Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4470 and GFF4471 are separated by 325 nucleotides GFF4471 and GFF4472 are separated by 41 nucleotides
GFF4470 - Putative ATPase involved in DNA repair, at 252,912 to 254,087
GFF4470
GFF4471 - Phenylalanine-specific permease, at 254,413 to 255,807
GFF4471
GFF4472 - Uncharacterized protein ybdG, at 255,849 to 257,096
GFF4472
Position (kb) 254
255
256 Strain fitness (log2 ratio) -1
0
1 at 254.002 kb on + strand at 254.002 kb on + strand at 254.209 kb on + strand at 254.217 kb on + strand at 254.252 kb on + strand at 254.253 kb on - strand at 254.602 kb on + strand, within GFF4471 at 254.797 kb on + strand, within GFF4471 at 254.797 kb on + strand, within GFF4471 at 254.798 kb on - strand, within GFF4471 at 254.798 kb on - strand, within GFF4471 at 254.798 kb on - strand, within GFF4471 at 254.799 kb on + strand, within GFF4471 at 254.823 kb on - strand, within GFF4471 at 255.025 kb on - strand, within GFF4471 at 255.025 kb on - strand, within GFF4471 at 255.078 kb on + strand, within GFF4471 at 255.173 kb on + strand, within GFF4471 at 255.173 kb on + strand, within GFF4471 at 255.173 kb on + strand, within GFF4471 at 255.174 kb on - strand, within GFF4471 at 255.193 kb on + strand, within GFF4471 at 255.502 kb on + strand, within GFF4471 at 255.503 kb on - strand, within GFF4471 at 255.503 kb on - strand, within GFF4471 at 255.558 kb on - strand, within GFF4471 at 255.711 kb on + strand at 255.762 kb on - strand at 255.781 kb on - strand at 255.851 kb on - strand at 255.908 kb on + strand at 255.909 kb on - strand at 256.006 kb on + strand, within GFF4472 at 256.006 kb on + strand, within GFF4472 at 256.050 kb on + strand, within GFF4472 at 256.092 kb on + strand, within GFF4472 at 256.224 kb on + strand, within GFF4472 at 256.278 kb on - strand, within GFF4472 at 256.394 kb on + strand, within GFF4472 at 256.394 kb on + strand, within GFF4472 at 256.433 kb on + strand, within GFF4472 at 256.459 kb on + strand, within GFF4472
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 254,002 + +0.6 254,002 + -0.3 254,209 + -0.8 254,217 + -1.0 254,252 + -0.2 254,253 - -0.6 254,602 + GFF4471 0.14 +1.2 254,797 + GFF4471 0.28 -0.3 254,797 + GFF4471 0.28 +0.1 254,798 - GFF4471 0.28 +0.5 254,798 - GFF4471 0.28 -0.9 254,798 - GFF4471 0.28 -0.2 254,799 + GFF4471 0.28 +0.6 254,823 - GFF4471 0.29 +0.4 255,025 - GFF4471 0.44 -1.7 255,025 - GFF4471 0.44 -0.0 255,078 + GFF4471 0.48 -0.0 255,173 + GFF4471 0.54 +0.2 255,173 + GFF4471 0.54 -0.2 255,173 + GFF4471 0.54 -1.0 255,174 - GFF4471 0.55 +1.3 255,193 + GFF4471 0.56 +0.0 255,502 + GFF4471 0.78 +0.2 255,503 - GFF4471 0.78 -0.1 255,503 - GFF4471 0.78 +0.2 255,558 - GFF4471 0.82 +0.0 255,711 + -0.1 255,762 - -0.3 255,781 - -0.1 255,851 - -0.2 255,908 + -0.0 255,909 - -0.1 256,006 + GFF4472 0.13 +0.3 256,006 + GFF4472 0.13 -1.7 256,050 + GFF4472 0.16 +0.4 256,092 + GFF4472 0.19 +0.1 256,224 + GFF4472 0.30 +0.3 256,278 - GFF4472 0.34 +0.4 256,394 + GFF4472 0.44 +0.6 256,394 + GFF4472 0.44 +0.9 256,433 + GFF4472 0.47 -0.6 256,459 + GFF4472 0.49 +0.3
Or see this region's nucleotide sequence