Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4468 and GFF4469 are separated by 12 nucleotides GFF4469 and GFF4470 are separated by 78 nucleotides GFF4470 and GFF4471 are separated by 325 nucleotides
GFF4468 - Putative periplasmic protein, at 252,024 to 252,260
GFF4468
GFF4469 - Putative inner membrane protein, at 252,273 to 252,833
GFF4469
GFF4470 - Putative ATPase involved in DNA repair, at 252,912 to 254,087
GFF4470
GFF4471 - Phenylalanine-specific permease, at 254,413 to 255,807
GFF4471
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -1
0
1 at 251.984 kb on - strand at 251.986 kb on + strand at 252.112 kb on - strand, within GFF4468 at 252.399 kb on - strand, within GFF4469 at 252.525 kb on - strand, within GFF4469 at 252.528 kb on - strand, within GFF4469 at 252.528 kb on - strand, within GFF4469 at 252.584 kb on - strand, within GFF4469 at 252.610 kb on + strand, within GFF4469 at 252.714 kb on + strand, within GFF4469 at 252.754 kb on + strand, within GFF4469 at 252.767 kb on - strand, within GFF4469 at 252.913 kb on + strand at 253.003 kb on + strand at 253.004 kb on - strand at 253.107 kb on + strand, within GFF4470 at 253.108 kb on - strand, within GFF4470 at 253.233 kb on - strand, within GFF4470 at 253.239 kb on + strand, within GFF4470 at 253.240 kb on - strand, within GFF4470 at 253.412 kb on - strand, within GFF4470 at 253.412 kb on - strand, within GFF4470 at 254.002 kb on + strand at 254.002 kb on + strand at 254.209 kb on + strand at 254.217 kb on + strand at 254.252 kb on + strand at 254.253 kb on - strand at 254.602 kb on + strand, within GFF4471 at 254.797 kb on + strand, within GFF4471 at 254.797 kb on + strand, within GFF4471 at 254.798 kb on - strand, within GFF4471 at 254.798 kb on - strand, within GFF4471 at 254.798 kb on - strand, within GFF4471 at 254.799 kb on + strand, within GFF4471 at 254.823 kb on - strand, within GFF4471 at 255.025 kb on - strand, within GFF4471 at 255.025 kb on - strand, within GFF4471 at 255.078 kb on + strand, within GFF4471
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 251,984 - -0.5 251,986 + +0.6 252,112 - GFF4468 0.37 -0.0 252,399 - GFF4469 0.22 +0.2 252,525 - GFF4469 0.45 +0.1 252,528 - GFF4469 0.45 +0.2 252,528 - GFF4469 0.45 +0.2 252,584 - GFF4469 0.55 +0.0 252,610 + GFF4469 0.60 +0.1 252,714 + GFF4469 0.79 -0.1 252,754 + GFF4469 0.86 -0.2 252,767 - GFF4469 0.88 +0.6 252,913 + -0.2 253,003 + +0.1 253,004 - -0.5 253,107 + GFF4470 0.17 -0.4 253,108 - GFF4470 0.17 +0.5 253,233 - GFF4470 0.27 +0.1 253,239 + GFF4470 0.28 +0.4 253,240 - GFF4470 0.28 -0.1 253,412 - GFF4470 0.43 +0.4 253,412 - GFF4470 0.43 +0.1 254,002 + +0.6 254,002 + -0.3 254,209 + -0.8 254,217 + -1.0 254,252 + -0.2 254,253 - -0.6 254,602 + GFF4471 0.14 +1.2 254,797 + GFF4471 0.28 -0.3 254,797 + GFF4471 0.28 +0.1 254,798 - GFF4471 0.28 +0.5 254,798 - GFF4471 0.28 -0.9 254,798 - GFF4471 0.28 -0.2 254,799 + GFF4471 0.28 +0.6 254,823 - GFF4471 0.29 +0.4 255,025 - GFF4471 0.44 -1.7 255,025 - GFF4471 0.44 -0.0 255,078 + GFF4471 0.48 -0.0
Or see this region's nucleotide sequence