Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4451 and GFF4452 are separated by 14 nucleotides GFF4452 and GFF4453 are separated by 9 nucleotides GFF4453 and GFF4454 are separated by 45 nucleotides
GFF4451 - Outer membrane usher protein SfmD, at 236,262 to 238,874
GFF4451
GFF4452 - Fimbriae-like adhesin SfmH, at 238,889 to 239,896
GFF4452
GFF4453 - Fimbriae-like periplasmic protein SfmF, at 239,906 to 240,424
GFF4453
GFF4454 - Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family), at 240,470 to 241,102
GFF4454
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 237.893 kb on + strand, within GFF4451 at 237.908 kb on + strand, within GFF4451 at 237.915 kb on + strand, within GFF4451 at 237.949 kb on + strand, within GFF4451 at 238.022 kb on + strand, within GFF4451 at 238.023 kb on - strand, within GFF4451 at 238.073 kb on + strand, within GFF4451 at 238.085 kb on + strand, within GFF4451 at 238.086 kb on - strand, within GFF4451 at 238.086 kb on - strand, within GFF4451 at 238.089 kb on + strand, within GFF4451 at 238.131 kb on - strand, within GFF4451 at 238.173 kb on - strand, within GFF4451 at 238.203 kb on - strand, within GFF4451 at 238.208 kb on + strand, within GFF4451 at 238.218 kb on + strand, within GFF4451 at 238.220 kb on + strand, within GFF4451 at 238.221 kb on - strand, within GFF4451 at 238.221 kb on - strand, within GFF4451 at 238.255 kb on - strand, within GFF4451 at 238.282 kb on - strand, within GFF4451 at 238.282 kb on - strand, within GFF4451 at 238.305 kb on - strand, within GFF4451 at 238.305 kb on - strand, within GFF4451 at 238.346 kb on + strand, within GFF4451 at 238.481 kb on - strand, within GFF4451 at 238.490 kb on + strand, within GFF4451 at 238.508 kb on + strand, within GFF4451 at 238.509 kb on - strand, within GFF4451 at 238.606 kb on + strand, within GFF4451 at 238.698 kb on - strand at 238.800 kb on + strand at 239.133 kb on - strand, within GFF4452 at 239.133 kb on - strand, within GFF4452 at 239.136 kb on + strand, within GFF4452 at 239.177 kb on + strand, within GFF4452 at 239.195 kb on + strand, within GFF4452 at 239.239 kb on - strand, within GFF4452 at 239.258 kb on + strand, within GFF4452 at 239.281 kb on + strand, within GFF4452 at 239.362 kb on + strand, within GFF4452 at 239.399 kb on + strand, within GFF4452 at 239.400 kb on - strand, within GFF4452 at 239.440 kb on - strand, within GFF4452 at 239.441 kb on + strand, within GFF4452 at 239.450 kb on - strand, within GFF4452 at 239.541 kb on + strand, within GFF4452 at 239.605 kb on + strand, within GFF4452 at 239.614 kb on + strand, within GFF4452 at 239.720 kb on - strand, within GFF4452 at 239.722 kb on + strand, within GFF4452 at 239.806 kb on + strand at 240.167 kb on - strand, within GFF4453 at 240.167 kb on - strand, within GFF4453 at 240.351 kb on - strand, within GFF4453 at 240.353 kb on - strand, within GFF4453 at 240.422 kb on + strand at 240.423 kb on - strand at 240.471 kb on + strand at 240.539 kb on + strand, within GFF4454
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 237,893 + GFF4451 0.62 -0.2 237,908 + GFF4451 0.63 -0.0 237,915 + GFF4451 0.63 +2.9 237,949 + GFF4451 0.65 -0.4 238,022 + GFF4451 0.67 +0.2 238,023 - GFF4451 0.67 -0.5 238,073 + GFF4451 0.69 -1.1 238,085 + GFF4451 0.70 -0.4 238,086 - GFF4451 0.70 -0.0 238,086 - GFF4451 0.70 -0.2 238,089 + GFF4451 0.70 -0.3 238,131 - GFF4451 0.72 +0.3 238,173 - GFF4451 0.73 +0.7 238,203 - GFF4451 0.74 -0.3 238,208 + GFF4451 0.74 +0.8 238,218 + GFF4451 0.75 +0.3 238,220 + GFF4451 0.75 +0.7 238,221 - GFF4451 0.75 -0.2 238,221 - GFF4451 0.75 -0.2 238,255 - GFF4451 0.76 +1.3 238,282 - GFF4451 0.77 -2.1 238,282 - GFF4451 0.77 +0.0 238,305 - GFF4451 0.78 -0.6 238,305 - GFF4451 0.78 -0.4 238,346 + GFF4451 0.80 +0.1 238,481 - GFF4451 0.85 -0.0 238,490 + GFF4451 0.85 +0.2 238,508 + GFF4451 0.86 -0.2 238,509 - GFF4451 0.86 +1.1 238,606 + GFF4451 0.90 -0.6 238,698 - -0.2 238,800 + -0.3 239,133 - GFF4452 0.24 -0.2 239,133 - GFF4452 0.24 -0.7 239,136 + GFF4452 0.25 -0.2 239,177 + GFF4452 0.29 -0.5 239,195 + GFF4452 0.30 -0.2 239,239 - GFF4452 0.35 -1.3 239,258 + GFF4452 0.37 -0.6 239,281 + GFF4452 0.39 -0.4 239,362 + GFF4452 0.47 -0.1 239,399 + GFF4452 0.51 -0.2 239,400 - GFF4452 0.51 -0.2 239,440 - GFF4452 0.55 +0.4 239,441 + GFF4452 0.55 +0.5 239,450 - GFF4452 0.56 +0.0 239,541 + GFF4452 0.65 +0.2 239,605 + GFF4452 0.71 +0.0 239,614 + GFF4452 0.72 -0.1 239,720 - GFF4452 0.82 -0.7 239,722 + GFF4452 0.83 -0.2 239,806 + -0.4 240,167 - GFF4453 0.50 -0.2 240,167 - GFF4453 0.50 -0.5 240,351 - GFF4453 0.86 +0.2 240,353 - GFF4453 0.86 -0.6 240,422 + +0.3 240,423 - -0.5 240,471 + -0.5 240,539 + GFF4454 0.11 +0.0
Or see this region's nucleotide sequence