Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4417 and GFF4418 overlap by 8 nucleotides GFF4418 and GFF4419 are separated by 38 nucleotides GFF4419 and GFF4420 are separated by 69 nucleotides
GFF4417 - Methionine ABC transporter ATP-binding protein, at 202,193 to 203,209
GFF4417
GFF4418 - Methionine ABC transporter permease protein, at 203,202 to 203,861
GFF4418
GFF4419 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 203,900 to 204,994
GFF4419
GFF4420 - DNA-binding transcriptional activator of the allD operon, at 205,064 to 205,990
GFF4420
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1
2 at 203.083 kb on + strand, within GFF4417 at 203.134 kb on + strand at 203.410 kb on + strand, within GFF4418 at 203.410 kb on + strand, within GFF4418 at 203.423 kb on - strand, within GFF4418 at 203.454 kb on - strand, within GFF4418 at 203.594 kb on + strand, within GFF4418 at 203.595 kb on - strand, within GFF4418 at 203.595 kb on - strand, within GFF4418 at 203.597 kb on + strand, within GFF4418 at 203.597 kb on + strand, within GFF4418 at 203.598 kb on - strand, within GFF4418 at 203.609 kb on - strand, within GFF4418 at 203.668 kb on + strand, within GFF4418 at 203.742 kb on + strand, within GFF4418 at 203.874 kb on + strand at 203.896 kb on + strand at 203.897 kb on - strand at 203.902 kb on - strand at 203.985 kb on + strand at 203.986 kb on - strand at 204.007 kb on + strand at 204.056 kb on + strand, within GFF4419 at 204.162 kb on + strand, within GFF4419 at 204.356 kb on + strand, within GFF4419 at 204.620 kb on - strand, within GFF4419 at 204.635 kb on - strand, within GFF4419 at 204.635 kb on - strand, within GFF4419 at 204.674 kb on + strand, within GFF4419 at 204.679 kb on + strand, within GFF4419 at 204.680 kb on - strand, within GFF4419 at 204.832 kb on - strand, within GFF4419 at 204.926 kb on + strand at 204.994 kb on + strand at 205.007 kb on - strand at 205.331 kb on - strand, within GFF4420 at 205.455 kb on - strand, within GFF4420 at 205.490 kb on + strand, within GFF4420 at 205.500 kb on - strand, within GFF4420 at 205.513 kb on + strand, within GFF4420 at 205.519 kb on + strand, within GFF4420 at 205.519 kb on + strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.655 kb on + strand, within GFF4420 at 205.682 kb on - strand, within GFF4420 at 205.683 kb on + strand, within GFF4420 at 205.684 kb on - strand, within GFF4420 at 205.910 kb on - strand at 205.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 203,083 + GFF4417 0.88 -0.0 203,134 + +0.1 203,410 + GFF4418 0.32 +0.4 203,410 + GFF4418 0.32 -0.3 203,423 - GFF4418 0.33 +0.2 203,454 - GFF4418 0.38 +0.3 203,594 + GFF4418 0.59 +0.3 203,595 - GFF4418 0.60 -0.1 203,595 - GFF4418 0.60 +2.3 203,597 + GFF4418 0.60 +0.1 203,597 + GFF4418 0.60 -0.9 203,598 - GFF4418 0.60 -0.2 203,609 - GFF4418 0.62 +0.8 203,668 + GFF4418 0.71 +0.3 203,742 + GFF4418 0.82 +0.2 203,874 + +0.1 203,896 + +0.1 203,897 - +0.1 203,902 - +0.1 203,985 + -0.1 203,986 - -0.2 204,007 + +0.3 204,056 + GFF4419 0.14 +0.8 204,162 + GFF4419 0.24 +0.4 204,356 + GFF4419 0.42 +0.2 204,620 - GFF4419 0.66 +0.3 204,635 - GFF4419 0.67 +0.2 204,635 - GFF4419 0.67 +0.3 204,674 + GFF4419 0.71 +0.4 204,679 + GFF4419 0.71 +0.0 204,680 - GFF4419 0.71 -0.3 204,832 - GFF4419 0.85 -0.1 204,926 + -0.2 204,994 + +0.3 205,007 - +0.0 205,331 - GFF4420 0.29 +0.1 205,455 - GFF4420 0.42 -0.4 205,490 + GFF4420 0.46 -0.2 205,500 - GFF4420 0.47 -0.3 205,513 + GFF4420 0.48 -1.1 205,519 + GFF4420 0.49 +0.3 205,519 + GFF4420 0.49 -0.2 205,520 - GFF4420 0.49 -0.6 205,520 - GFF4420 0.49 +0.5 205,520 - GFF4420 0.49 -0.1 205,520 - GFF4420 0.49 +0.1 205,655 + GFF4420 0.64 +0.9 205,682 - GFF4420 0.67 -0.3 205,683 + GFF4420 0.67 -0.1 205,684 - GFF4420 0.67 -0.1 205,910 - -0.2 205,960 + +0.2
Or see this region's nucleotide sequence