Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF431 and GFF432 are separated by 2 nucleotides GFF432 and GFF433 are separated by 138 nucleotides GFF433 and GFF434 are separated by 23 nucleotides GFF434 and GFF435 are separated by 11 nucleotides
GFF431 - 2,3-diketo-L-gulonate TRAP transporter large permease protein yiaN, at 153,117 to 154,394
GFF431
GFF432 - 2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM, at 154,397 to 154,870
GFF432
GFF433 - Putative chemotaxis protein, resembles cheA, at 155,009 to 155,941
GFF433
GFF434 - hypothetical protein, at 155,965 to 156,429
GFF434
GFF435 - 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130), at 156,441 to 157,439
GFF435
Position (kb) 155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 154.228 kb on - strand, within GFF431 at 154.287 kb on - strand at 154.342 kb on - strand at 154.380 kb on + strand at 154.381 kb on - strand at 154.399 kb on - strand at 154.443 kb on - strand at 154.504 kb on + strand, within GFF432 at 154.505 kb on - strand, within GFF432 at 154.506 kb on + strand, within GFF432 at 154.507 kb on - strand, within GFF432 at 154.507 kb on - strand, within GFF432 at 154.507 kb on - strand, within GFF432 at 154.586 kb on + strand, within GFF432 at 154.808 kb on - strand, within GFF432 at 155.230 kb on - strand, within GFF433 at 155.320 kb on + strand, within GFF433 at 155.353 kb on + strand, within GFF433 at 155.366 kb on + strand, within GFF433 at 155.366 kb on + strand, within GFF433 at 155.367 kb on - strand, within GFF433 at 155.367 kb on - strand, within GFF433 at 155.383 kb on + strand, within GFF433 at 155.499 kb on - strand, within GFF433 at 155.622 kb on + strand, within GFF433 at 155.921 kb on - strand at 155.933 kb on - strand at 156.351 kb on + strand, within GFF434 at 156.376 kb on + strand, within GFF434 at 156.414 kb on + strand at 156.442 kb on + strand at 156.642 kb on + strand, within GFF435 at 156.643 kb on - strand, within GFF435 at 156.643 kb on - strand, within GFF435 at 156.923 kb on + strand, within GFF435 at 156.923 kb on + strand, within GFF435 at 156.923 kb on + strand, within GFF435 at 156.924 kb on - strand, within GFF435 at 156.927 kb on + strand, within GFF435 at 156.927 kb on + strand, within GFF435
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 154,228 - GFF431 0.87 -0.1 154,287 - +0.1 154,342 - -0.3 154,380 + -0.1 154,381 - -0.5 154,399 - -0.1 154,443 - +0.0 154,504 + GFF432 0.23 -0.8 154,505 - GFF432 0.23 +1.5 154,506 + GFF432 0.23 +0.8 154,507 - GFF432 0.23 +0.3 154,507 - GFF432 0.23 -0.1 154,507 - GFF432 0.23 +0.1 154,586 + GFF432 0.40 -0.7 154,808 - GFF432 0.87 -0.0 155,230 - GFF433 0.24 -0.4 155,320 + GFF433 0.33 -0.4 155,353 + GFF433 0.37 -0.8 155,366 + GFF433 0.38 -1.7 155,366 + GFF433 0.38 +0.4 155,367 - GFF433 0.38 -0.0 155,367 - GFF433 0.38 +0.0 155,383 + GFF433 0.40 -0.3 155,499 - GFF433 0.53 +1.5 155,622 + GFF433 0.66 -0.2 155,921 - -1.2 155,933 - -0.2 156,351 + GFF434 0.83 +0.1 156,376 + GFF434 0.88 -0.3 156,414 + +0.2 156,442 + -0.5 156,642 + GFF435 0.20 -0.2 156,643 - GFF435 0.20 -2.8 156,643 - GFF435 0.20 +0.6 156,923 + GFF435 0.48 -0.4 156,923 + GFF435 0.48 -0.1 156,923 + GFF435 0.48 +0.5 156,924 - GFF435 0.48 +0.7 156,927 + GFF435 0.49 +0.1 156,927 + GFF435 0.49 -0.3
Or see this region's nucleotide sequence