Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4272

Experiment: C.elegans, mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4271 and GFF4272 are separated by 346 nucleotidesGFF4272 and GFF4273 are separated by 14 nucleotides GFF4271 - Penicillin-binding protein AmpH, at 59,067 to 60,224 GFF4271 GFF4272 - SbmA protein, at 60,571 to 61,791 GFF4272 GFF4273 - Putative outer membrane lipoprotein, at 61,806 to 62,900 GFF4273 Position (kb) 60 61 62Strain fitness (log2 ratio) -1 0 1 2at 59.615 kb on + strand, within GFF4271at 59.615 kb on + strand, within GFF4271at 59.616 kb on - strand, within GFF4271at 59.852 kb on - strand, within GFF4271at 59.882 kb on - strand, within GFF4271at 60.094 kb on + strand, within GFF4271at 60.095 kb on - strand, within GFF4271at 60.095 kb on - strand, within GFF4271at 60.102 kb on - strand, within GFF4271at 60.176 kb on + strandat 60.215 kb on + strandat 60.237 kb on + strandat 60.237 kb on + strandat 60.237 kb on + strandat 60.238 kb on - strandat 60.247 kb on - strandat 60.247 kb on - strandat 60.267 kb on - strandat 60.267 kb on - strandat 60.268 kb on + strandat 60.388 kb on - strandat 60.452 kb on + strandat 60.467 kb on - strandat 60.467 kb on - strandat 60.467 kb on - strandat 60.516 kb on + strandat 60.758 kb on - strand, within GFF4272at 60.802 kb on + strand, within GFF4272at 60.802 kb on + strand, within GFF4272at 61.054 kb on + strand, within GFF4272at 61.054 kb on + strand, within GFF4272at 61.055 kb on - strand, within GFF4272at 61.058 kb on + strand, within GFF4272at 61.059 kb on - strand, within GFF4272at 61.059 kb on - strand, within GFF4272at 61.090 kb on + strand, within GFF4272at 61.090 kb on + strand, within GFF4272at 61.091 kb on - strand, within GFF4272at 61.092 kb on + strand, within GFF4272at 61.092 kb on + strand, within GFF4272at 61.092 kb on + strand, within GFF4272at 61.108 kb on + strand, within GFF4272at 61.152 kb on + strand, within GFF4272at 61.153 kb on - strand, within GFF4272at 61.406 kb on - strand, within GFF4272at 61.492 kb on - strand, within GFF4272at 61.496 kb on - strand, within GFF4272at 61.516 kb on + strand, within GFF4272at 61.517 kb on - strand, within GFF4272at 61.517 kb on - strand, within GFF4272at 61.517 kb on - strand, within GFF4272at 61.518 kb on + strand, within GFF4272at 61.522 kb on + strand, within GFF4272at 61.522 kb on + strand, within GFF4272at 61.522 kb on + strand, within GFF4272at 61.523 kb on - strand, within GFF4272at 61.523 kb on - strand, within GFF4272at 61.546 kb on + strand, within GFF4272at 61.547 kb on - strand, within GFF4272at 61.719 kb on + strandat 61.728 kb on - strandat 61.785 kb on + strandat 61.868 kb on + strandat 61.872 kb on - strandat 61.927 kb on + strand, within GFF4273at 61.997 kb on + strand, within GFF4273at 62.030 kb on + strand, within GFF4273at 62.103 kb on - strand, within GFF4273at 62.205 kb on + strand, within GFF4273at 62.208 kb on - strand, within GFF4273at 62.246 kb on + strand, within GFF4273at 62.268 kb on - strand, within GFF4273at 62.273 kb on + strand, within GFF4273at 62.273 kb on + strand, within GFF4273at 62.309 kb on + strand, within GFF4273at 62.401 kb on + strand, within GFF4273at 62.401 kb on + strand, within GFF4273at 62.737 kb on - strand, within GFF4273

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
remove
59,615 + GFF4271 0.47 -0.8
59,615 + GFF4271 0.47 +0.5
59,616 - GFF4271 0.47 -0.0
59,852 - GFF4271 0.68 +0.2
59,882 - GFF4271 0.70 +0.4
60,094 + GFF4271 0.89 -0.2
60,095 - GFF4271 0.89 +0.0
60,095 - GFF4271 0.89 +0.6
60,102 - GFF4271 0.89 +0.2
60,176 + -0.3
60,215 + -0.1
60,237 + -0.7
60,237 + -0.2
60,237 + -0.1
60,238 - +0.4
60,247 - -0.2
60,247 - +0.4
60,267 - +0.4
60,267 - +0.6
60,268 + +0.3
60,388 - +0.4
60,452 + -0.1
60,467 - +0.7
60,467 - +1.1
60,467 - +0.6
60,516 + -0.2
60,758 - GFF4272 0.15 +0.6
60,802 + GFF4272 0.19 +0.1
60,802 + GFF4272 0.19 +0.5
61,054 + GFF4272 0.40 +0.4
61,054 + GFF4272 0.40 +0.2
61,055 - GFF4272 0.40 +0.8
61,058 + GFF4272 0.40 -0.2
61,059 - GFF4272 0.40 -0.4
61,059 - GFF4272 0.40 +0.0
61,090 + GFF4272 0.43 -0.3
61,090 + GFF4272 0.43 +0.2
61,091 - GFF4272 0.43 +0.6
61,092 + GFF4272 0.43 -0.0
61,092 + GFF4272 0.43 +0.4
61,092 + GFF4272 0.43 -0.1
61,108 + GFF4272 0.44 -0.7
61,152 + GFF4272 0.48 +0.1
61,153 - GFF4272 0.48 -0.6
61,406 - GFF4272 0.68 -0.6
61,492 - GFF4272 0.75 +0.3
61,496 - GFF4272 0.76 +1.8
61,516 + GFF4272 0.77 -0.3
61,517 - GFF4272 0.77 -0.9
61,517 - GFF4272 0.77 +0.1
61,517 - GFF4272 0.77 +0.2
61,518 + GFF4272 0.78 +0.8
61,522 + GFF4272 0.78 +0.7
61,522 + GFF4272 0.78 +0.2
61,522 + GFF4272 0.78 +0.1
61,523 - GFF4272 0.78 +0.9
61,523 - GFF4272 0.78 +1.3
61,546 + GFF4272 0.80 +0.4
61,547 - GFF4272 0.80 +0.2
61,719 + +0.0
61,728 - -0.4
61,785 + +0.3
61,868 + -0.0
61,872 - +0.0
61,927 + GFF4273 0.11 +0.2
61,997 + GFF4273 0.17 +0.0
62,030 + GFF4273 0.20 +0.5
62,103 - GFF4273 0.27 -0.4
62,205 + GFF4273 0.36 -0.7
62,208 - GFF4273 0.37 +0.2
62,246 + GFF4273 0.40 -0.0
62,268 - GFF4273 0.42 -0.0
62,273 + GFF4273 0.43 +0.0
62,273 + GFF4273 0.43 -0.3
62,309 + GFF4273 0.46 -0.2
62,401 + GFF4273 0.54 -0.7
62,401 + GFF4273 0.54 -0.1
62,737 - GFF4273 0.85 -0.1

Or see this region's nucleotide sequence