Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4255 and GFF4256 overlap by 1 nucleotides GFF4256 and GFF4257 are separated by 205 nucleotides GFF4257 and GFF4258 are separated by 163 nucleotides
GFF4255 - putative Cytochrome bd2, subunit II, at 40,378 to 41,388
GFF4255
GFF4256 - putative Cytochrome bd2, subunit II, at 41,388 to 41,519
GFF4256
GFF4257 - Transcriptional regulator, AraC family, at 41,725 to 42,729
GFF4257
GFF4258 - Ferrichrome-iron receptor, at 42,893 to 44,983
GFF4258
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.888 kb on + strand, within GFF4255 at 40.888 kb on + strand, within GFF4255 at 41.067 kb on - strand, within GFF4255 at 41.071 kb on + strand, within GFF4255 at 41.072 kb on - strand, within GFF4255 at 41.341 kb on + strand at 41.422 kb on + strand, within GFF4256 at 41.672 kb on - strand at 41.851 kb on - strand, within GFF4257 at 41.892 kb on - strand, within GFF4257 at 41.917 kb on - strand, within GFF4257 at 41.917 kb on - strand, within GFF4257 at 41.939 kb on + strand, within GFF4257 at 41.939 kb on + strand, within GFF4257 at 41.940 kb on - strand, within GFF4257 at 41.940 kb on - strand, within GFF4257 at 41.947 kb on + strand, within GFF4257 at 41.948 kb on - strand, within GFF4257 at 41.980 kb on + strand, within GFF4257 at 41.981 kb on - strand, within GFF4257 at 41.981 kb on - strand, within GFF4257 at 41.981 kb on - strand, within GFF4257 at 41.982 kb on + strand, within GFF4257 at 41.982 kb on + strand, within GFF4257 at 41.983 kb on - strand, within GFF4257 at 42.004 kb on - strand, within GFF4257 at 42.142 kb on + strand, within GFF4257 at 42.299 kb on + strand, within GFF4257 at 42.334 kb on + strand, within GFF4257 at 42.521 kb on - strand, within GFF4257 at 42.521 kb on - strand, within GFF4257 at 42.827 kb on + strand at 42.828 kb on - strand at 42.828 kb on - strand at 42.865 kb on + strand at 43.069 kb on + strand at 43.142 kb on + strand, within GFF4258 at 43.178 kb on + strand, within GFF4258 at 43.186 kb on - strand, within GFF4258 at 43.186 kb on - strand, within GFF4258 at 43.207 kb on + strand, within GFF4258 at 43.223 kb on + strand, within GFF4258 at 43.427 kb on - strand, within GFF4258 at 43.585 kb on + strand, within GFF4258 at 43.609 kb on + strand, within GFF4258 at 43.685 kb on - strand, within GFF4258
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 40,888 + GFF4255 0.50 +0.0 40,888 + GFF4255 0.50 -0.5 41,067 - GFF4255 0.68 +0.1 41,071 + GFF4255 0.69 +0.9 41,072 - GFF4255 0.69 -1.7 41,341 + +0.8 41,422 + GFF4256 0.26 -0.8 41,672 - +0.2 41,851 - GFF4257 0.13 +0.2 41,892 - GFF4257 0.17 -0.6 41,917 - GFF4257 0.19 +0.1 41,917 - GFF4257 0.19 +0.4 41,939 + GFF4257 0.21 -0.1 41,939 + GFF4257 0.21 +0.6 41,940 - GFF4257 0.21 -0.4 41,940 - GFF4257 0.21 -0.1 41,947 + GFF4257 0.22 +0.4 41,948 - GFF4257 0.22 -0.1 41,980 + GFF4257 0.25 -0.0 41,981 - GFF4257 0.25 +0.5 41,981 - GFF4257 0.25 +0.1 41,981 - GFF4257 0.25 -0.4 41,982 + GFF4257 0.26 +0.7 41,982 + GFF4257 0.26 +0.1 41,983 - GFF4257 0.26 +0.3 42,004 - GFF4257 0.28 +0.8 42,142 + GFF4257 0.41 -0.0 42,299 + GFF4257 0.57 +0.3 42,334 + GFF4257 0.61 +0.3 42,521 - GFF4257 0.79 +0.7 42,521 - GFF4257 0.79 +0.2 42,827 + +0.6 42,828 - +0.4 42,828 - -1.2 42,865 + +0.0 43,069 + +0.2 43,142 + GFF4258 0.12 -0.6 43,178 + GFF4258 0.14 +0.3 43,186 - GFF4258 0.14 -0.1 43,186 - GFF4258 0.14 -0.0 43,207 + GFF4258 0.15 +0.3 43,223 + GFF4258 0.16 +0.1 43,427 - GFF4258 0.26 -0.4 43,585 + GFF4258 0.33 -0.3 43,609 + GFF4258 0.34 -0.1 43,685 - GFF4258 0.38 +0.6
Or see this region's nucleotide sequence