Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4188 and GFF4189 are separated by 5 nucleotides GFF4189 and GFF4190 are separated by 253 nucleotides GFF4190 and GFF4191 are separated by 41 nucleotides
GFF4188 - Response regulator of zinc sigma-54-dependent two-component system, at 3,421 to 4,746
GFF4188
GFF4189 - Sensor protein of zinc sigma-54-dependent two-component system, at 4,752 to 6,149
GFF4189
GFF4190 - Zinc resistance-associated protein, at 6,403 to 6,858
GFF4190
GFF4191 - FIG00638261: hypothetical protein, at 6,900 to 7,592
GFF4191
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.781 kb on + strand, within GFF4188 at 3.849 kb on - strand, within GFF4188 at 3.852 kb on - strand, within GFF4188 at 3.935 kb on - strand, within GFF4188 at 3.946 kb on - strand, within GFF4188 at 4.144 kb on - strand, within GFF4188 at 4.144 kb on - strand, within GFF4188 at 4.685 kb on - strand at 4.702 kb on + strand at 4.703 kb on - strand at 4.703 kb on - strand at 4.754 kb on - strand at 4.907 kb on - strand, within GFF4189 at 5.102 kb on + strand, within GFF4189 at 5.103 kb on - strand, within GFF4189 at 5.103 kb on - strand, within GFF4189 at 5.338 kb on + strand, within GFF4189 at 5.471 kb on - strand, within GFF4189 at 5.496 kb on + strand, within GFF4189 at 5.543 kb on + strand, within GFF4189 at 5.547 kb on - strand, within GFF4189 at 5.598 kb on - strand, within GFF4189 at 5.598 kb on - strand, within GFF4189 at 5.803 kb on + strand, within GFF4189 at 5.803 kb on + strand, within GFF4189 at 5.834 kb on + strand, within GFF4189 at 5.835 kb on - strand, within GFF4189 at 5.835 kb on - strand, within GFF4189 at 5.949 kb on - strand, within GFF4189 at 5.953 kb on - strand, within GFF4189 at 5.953 kb on - strand, within GFF4189 at 5.953 kb on - strand, within GFF4189 at 5.986 kb on - strand, within GFF4189 at 5.986 kb on - strand, within GFF4189 at 5.986 kb on - strand, within GFF4189 at 6.094 kb on - strand at 6.129 kb on - strand at 6.139 kb on - strand at 6.343 kb on + strand at 6.418 kb on - strand at 6.427 kb on - strand at 6.435 kb on - strand at 6.507 kb on + strand, within GFF4190 at 6.526 kb on - strand, within GFF4190 at 6.569 kb on - strand, within GFF4190 at 6.577 kb on + strand, within GFF4190 at 6.583 kb on - strand, within GFF4190 at 6.632 kb on - strand, within GFF4190 at 6.632 kb on - strand, within GFF4190 at 7.039 kb on - strand, within GFF4191 at 7.123 kb on - strand, within GFF4191
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 3,781 + GFF4188 0.27 -0.2 3,849 - GFF4188 0.32 +0.1 3,852 - GFF4188 0.33 -0.1 3,935 - GFF4188 0.39 +0.5 3,946 - GFF4188 0.40 +0.5 4,144 - GFF4188 0.55 +0.8 4,144 - GFF4188 0.55 +0.1 4,685 - +0.4 4,702 + +0.3 4,703 - +0.3 4,703 - -0.0 4,754 - -0.2 4,907 - GFF4189 0.11 -1.3 5,102 + GFF4189 0.25 -1.9 5,103 - GFF4189 0.25 -3.3 5,103 - GFF4189 0.25 +1.6 5,338 + GFF4189 0.42 +0.4 5,471 - GFF4189 0.51 -0.4 5,496 + GFF4189 0.53 +1.3 5,543 + GFF4189 0.57 +0.3 5,547 - GFF4189 0.57 +0.2 5,598 - GFF4189 0.61 -0.4 5,598 - GFF4189 0.61 -1.8 5,803 + GFF4189 0.75 -0.4 5,803 + GFF4189 0.75 +0.3 5,834 + GFF4189 0.77 +0.1 5,835 - GFF4189 0.77 -1.6 5,835 - GFF4189 0.77 -0.6 5,949 - GFF4189 0.86 -0.6 5,953 - GFF4189 0.86 -1.1 5,953 - GFF4189 0.86 -0.2 5,953 - GFF4189 0.86 -1.1 5,986 - GFF4189 0.88 -1.0 5,986 - GFF4189 0.88 -0.6 5,986 - GFF4189 0.88 -0.8 6,094 - -0.0 6,129 - -0.5 6,139 - -0.5 6,343 + -0.2 6,418 - +0.2 6,427 - +0.2 6,435 - +0.5 6,507 + GFF4190 0.23 -0.4 6,526 - GFF4190 0.27 +0.3 6,569 - GFF4190 0.36 +0.7 6,577 + GFF4190 0.38 +1.4 6,583 - GFF4190 0.39 +0.3 6,632 - GFF4190 0.50 +0.1 6,632 - GFF4190 0.50 -0.1 7,039 - GFF4191 0.20 -0.1 7,123 - GFF4191 0.32 +0.1
Or see this region's nucleotide sequence