Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF417

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF415 and GFF416 are separated by 9 nucleotidesGFF416 and GFF417 overlap by 4 nucleotidesGFF417 and GFF418 are separated by 220 nucleotides GFF415 - FIG074102: hypothetical protein, at 133,720 to 133,929 GFF415 GFF416 - Mannitol operon repressor, at 133,939 to 134,529 GFF416 GFF417 - Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17), at 134,526 to 135,674 GFF417 GFF418 - PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component, at 135,895 to 137,811 GFF418 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1at 133.674 kb on - strandat 133.716 kb on + strandat 133.716 kb on + strandat 133.828 kb on + strand, within GFF415at 133.828 kb on + strand, within GFF415at 134.045 kb on + strand, within GFF416at 134.148 kb on - strand, within GFF416at 134.148 kb on - strand, within GFF416at 134.208 kb on - strand, within GFF416at 134.237 kb on + strand, within GFF416at 134.242 kb on - strand, within GFF416at 134.242 kb on - strand, within GFF416at 134.242 kb on - strand, within GFF416at 134.255 kb on - strand, within GFF416at 134.306 kb on + strand, within GFF416at 134.319 kb on - strand, within GFF416at 134.464 kb on + strand, within GFF416at 134.475 kb on + strandat 134.476 kb on - strandat 134.670 kb on - strand, within GFF417at 134.710 kb on - strand, within GFF417at 134.710 kb on - strand, within GFF417at 134.725 kb on + strand, within GFF417at 134.796 kb on + strand, within GFF417at 134.857 kb on + strand, within GFF417at 134.858 kb on - strand, within GFF417at 135.011 kb on + strand, within GFF417at 135.011 kb on + strand, within GFF417at 135.011 kb on + strand, within GFF417at 135.012 kb on - strand, within GFF417at 135.041 kb on + strand, within GFF417at 135.041 kb on - strand, within GFF417at 135.108 kb on - strand, within GFF417at 135.108 kb on - strand, within GFF417at 135.197 kb on + strand, within GFF417at 135.326 kb on + strand, within GFF417at 135.327 kb on - strand, within GFF417at 135.393 kb on - strand, within GFF417at 135.430 kb on - strand, within GFF417at 135.430 kb on - strand, within GFF417at 135.430 kb on - strand, within GFF417at 135.542 kb on + strand, within GFF417at 135.543 kb on - strand, within GFF417at 135.543 kb on - strand, within GFF417at 135.579 kb on + strandat 135.737 kb on - strandat 135.737 kb on - strandat 135.820 kb on - strandat 135.823 kb on + strandat 135.823 kb on + strandat 135.824 kb on - strandat 135.824 kb on - strandat 135.827 kb on + strandat 135.827 kb on + strandat 135.828 kb on - strandat 135.828 kb on - strandat 135.828 kb on - strandat 135.889 kb on + strandat 135.890 kb on - strandat 136.023 kb on + strandat 136.024 kb on - strandat 136.082 kb on - strandat 136.178 kb on + strand, within GFF418at 136.220 kb on + strand, within GFF418at 136.221 kb on - strand, within GFF418at 136.312 kb on - strand, within GFF418at 136.341 kb on + strand, within GFF418at 136.342 kb on - strand, within GFF418at 136.396 kb on - strand, within GFF418at 136.396 kb on - strand, within GFF418at 136.396 kb on - strand, within GFF418at 136.440 kb on - strand, within GFF418at 136.528 kb on - strand, within GFF418

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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133,674 - -0.4
133,716 + -0.3
133,716 + +0.0
133,828 + GFF415 0.51 -0.5
133,828 + GFF415 0.51 -0.1
134,045 + GFF416 0.18 +1.6
134,148 - GFF416 0.35 -1.1
134,148 - GFF416 0.35 -1.2
134,208 - GFF416 0.46 -0.8
134,237 + GFF416 0.50 -0.5
134,242 - GFF416 0.51 -1.2
134,242 - GFF416 0.51 -1.0
134,242 - GFF416 0.51 -0.9
134,255 - GFF416 0.53 -0.5
134,306 + GFF416 0.62 -0.5
134,319 - GFF416 0.64 -1.1
134,464 + GFF416 0.89 -0.7
134,475 + -2.5
134,476 - -0.1
134,670 - GFF417 0.13 +0.1
134,710 - GFF417 0.16 -0.4
134,710 - GFF417 0.16 +0.4
134,725 + GFF417 0.17 -0.9
134,796 + GFF417 0.23 -1.8
134,857 + GFF417 0.29 +0.6
134,858 - GFF417 0.29 +0.3
135,011 + GFF417 0.42 -2.6
135,011 + GFF417 0.42 -2.4
135,011 + GFF417 0.42 -1.0
135,012 - GFF417 0.42 -1.3
135,041 + GFF417 0.45 -1.3
135,041 - GFF417 0.45 -0.6
135,108 - GFF417 0.51 -1.2
135,108 - GFF417 0.51 +0.0
135,197 + GFF417 0.58 -0.4
135,326 + GFF417 0.70 -1.4
135,327 - GFF417 0.70 +0.0
135,393 - GFF417 0.75 -0.7
135,430 - GFF417 0.79 -1.0
135,430 - GFF417 0.79 -0.5
135,430 - GFF417 0.79 -1.0
135,542 + GFF417 0.88 +0.4
135,543 - GFF417 0.89 -0.1
135,543 - GFF417 0.89 +0.9
135,579 + -1.8
135,737 - +0.0
135,737 - -0.3
135,820 - +0.1
135,823 + +0.7
135,823 + -0.1
135,824 - -0.2
135,824 - +0.5
135,827 + +0.1
135,827 + +0.4
135,828 - +0.3
135,828 - +0.0
135,828 - -0.8
135,889 + +0.3
135,890 - +0.2
136,023 + +0.1
136,024 - +0.9
136,082 - +1.4
136,178 + GFF418 0.15 -0.3
136,220 + GFF418 0.17 +0.1
136,221 - GFF418 0.17 +0.1
136,312 - GFF418 0.22 -0.2
136,341 + GFF418 0.23 +1.6
136,342 - GFF418 0.23 -0.3
136,396 - GFF418 0.26 +0.6
136,396 - GFF418 0.26 +0.1
136,396 - GFF418 0.26 +0.5
136,440 - GFF418 0.28 +0.2
136,528 - GFF418 0.33 +0.3

Or see this region's nucleotide sequence