Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF409 and GFF410 overlap by 4 nucleotides GFF410 and GFF411 overlap by 4 nucleotides
GFF409 - L-lactate dehydrogenase (EC 1.1.2.3), at 123,551 to 124,741
GFF409
GFF410 - Lactate-responsive regulator LldR in Enterobacteria, GntR family, at 124,738 to 125,514
GFF410
GFF411 - L-lactate permease, at 125,511 to 127,166
GFF411
Position (kb) 124
125
126 Strain fitness (log2 ratio) -1
0
1 at 123.748 kb on - strand, within GFF409 at 124.063 kb on + strand, within GFF409 at 124.113 kb on + strand, within GFF409 at 124.130 kb on + strand, within GFF409 at 124.174 kb on + strand, within GFF409 at 124.197 kb on + strand, within GFF409 at 124.491 kb on + strand, within GFF409 at 124.492 kb on - strand, within GFF409 at 124.492 kb on - strand, within GFF409 at 124.643 kb on - strand at 124.644 kb on + strand at 124.746 kb on + strand at 124.767 kb on + strand at 124.767 kb on + strand at 124.768 kb on - strand at 124.869 kb on + strand, within GFF410 at 124.958 kb on + strand, within GFF410 at 124.958 kb on + strand, within GFF410 at 124.959 kb on - strand, within GFF410 at 124.962 kb on + strand, within GFF410 at 124.962 kb on + strand, within GFF410 at 124.963 kb on - strand, within GFF410 at 124.963 kb on - strand, within GFF410 at 125.387 kb on - strand, within GFF410 at 125.549 kb on + strand at 125.567 kb on + strand at 125.567 kb on + strand at 125.568 kb on - strand at 125.568 kb on - strand at 125.757 kb on + strand, within GFF411 at 125.757 kb on + strand, within GFF411 at 125.897 kb on - strand, within GFF411 at 126.018 kb on - strand, within GFF411 at 126.076 kb on + strand, within GFF411 at 126.076 kb on + strand, within GFF411 at 126.077 kb on - strand, within GFF411 at 126.089 kb on - strand, within GFF411 at 126.159 kb on - strand, within GFF411 at 126.172 kb on + strand, within GFF411 at 126.173 kb on - strand, within GFF411 at 126.284 kb on + strand, within GFF411 at 126.285 kb on - strand, within GFF411 at 126.285 kb on - strand, within GFF411 at 126.285 kb on - strand, within GFF411
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 123,748 - GFF409 0.17 +0.0 124,063 + GFF409 0.43 +0.0 124,113 + GFF409 0.47 -0.3 124,130 + GFF409 0.49 +0.3 124,174 + GFF409 0.52 -0.3 124,197 + GFF409 0.54 -0.3 124,491 + GFF409 0.79 +0.3 124,492 - GFF409 0.79 -0.2 124,492 - GFF409 0.79 -0.2 124,643 - -0.3 124,644 + +0.5 124,746 + +0.2 124,767 + -0.2 124,767 + +0.5 124,768 - -0.2 124,869 + GFF410 0.17 -0.1 124,958 + GFF410 0.28 +0.0 124,958 + GFF410 0.28 +0.1 124,959 - GFF410 0.28 +0.2 124,962 + GFF410 0.29 +0.7 124,962 + GFF410 0.29 +0.6 124,963 - GFF410 0.29 +0.1 124,963 - GFF410 0.29 +0.9 125,387 - GFF410 0.84 -0.3 125,549 + +0.4 125,567 + -0.3 125,567 + +0.0 125,568 - +0.1 125,568 - -1.6 125,757 + GFF411 0.15 -0.1 125,757 + GFF411 0.15 -0.4 125,897 - GFF411 0.23 -0.5 126,018 - GFF411 0.31 +0.3 126,076 + GFF411 0.34 -0.7 126,076 + GFF411 0.34 +0.1 126,077 - GFF411 0.34 +0.3 126,089 - GFF411 0.35 -0.1 126,159 - GFF411 0.39 +0.6 126,172 + GFF411 0.40 -0.2 126,173 - GFF411 0.40 +0.0 126,284 + GFF411 0.47 -0.0 126,285 - GFF411 0.47 +0.6 126,285 - GFF411 0.47 +1.0 126,285 - GFF411 0.47 +1.1
Or see this region's nucleotide sequence