Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4091 and GFF4092 are separated by 21 nucleotides GFF4092 and GFF4093 are separated by 405 nucleotides
GFF4091 - FIG034929: Fimbriae usher protein SafC, at 49,063 to 51,486
GFF4091
GFF4092 - Putative fimbrial structural subunit, at 51,508 to 51,978
GFF4092
GFF4093 - Polysaccharide deacetylase, at 52,384 to 53,205
GFF4093
Position (kb) 51
52 Strain fitness (log2 ratio) -2
-1
0
1 at 50.654 kb on + strand, within GFF4091 at 50.655 kb on - strand, within GFF4091 at 50.655 kb on - strand, within GFF4091 at 50.700 kb on + strand, within GFF4091 at 50.705 kb on + strand, within GFF4091 at 50.706 kb on - strand, within GFF4091 at 50.712 kb on + strand, within GFF4091 at 50.712 kb on + strand, within GFF4091 at 50.713 kb on - strand, within GFF4091 at 50.815 kb on + strand, within GFF4091 at 50.844 kb on + strand, within GFF4091 at 50.891 kb on + strand, within GFF4091 at 50.902 kb on + strand, within GFF4091 at 50.904 kb on + strand, within GFF4091 at 50.904 kb on + strand, within GFF4091 at 50.904 kb on + strand, within GFF4091 at 50.908 kb on + strand, within GFF4091 at 50.952 kb on + strand, within GFF4091 at 50.952 kb on + strand, within GFF4091 at 50.952 kb on + strand, within GFF4091 at 50.952 kb on + strand, within GFF4091 at 50.954 kb on + strand, within GFF4091 at 50.954 kb on + strand, within GFF4091 at 50.954 kb on + strand, within GFF4091 at 50.955 kb on - strand, within GFF4091 at 50.955 kb on - strand, within GFF4091 at 51.120 kb on + strand, within GFF4091 at 51.120 kb on + strand, within GFF4091 at 51.545 kb on - strand at 51.547 kb on - strand at 51.557 kb on + strand, within GFF4092 at 51.620 kb on + strand, within GFF4092 at 51.621 kb on - strand, within GFF4092 at 51.626 kb on + strand, within GFF4092 at 51.972 kb on + strand at 51.973 kb on - strand at 51.995 kb on + strand at 52.413 kb on - strand at 52.455 kb on - strand at 52.717 kb on + strand, within GFF4093 at 52.718 kb on - strand, within GFF4093 at 52.978 kb on + strand, within GFF4093
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 50,654 + GFF4091 0.66 -0.2 50,655 - GFF4091 0.66 +0.2 50,655 - GFF4091 0.66 -1.4 50,700 + GFF4091 0.68 +0.0 50,705 + GFF4091 0.68 +0.9 50,706 - GFF4091 0.68 -0.3 50,712 + GFF4091 0.68 +0.0 50,712 + GFF4091 0.68 +0.2 50,713 - GFF4091 0.68 +0.4 50,815 + GFF4091 0.72 +0.5 50,844 + GFF4091 0.73 +0.1 50,891 + GFF4091 0.75 +0.6 50,902 + GFF4091 0.76 -0.6 50,904 + GFF4091 0.76 +0.0 50,904 + GFF4091 0.76 +0.1 50,904 + GFF4091 0.76 -0.6 50,908 + GFF4091 0.76 -0.2 50,952 + GFF4091 0.78 -0.4 50,952 + GFF4091 0.78 +0.1 50,952 + GFF4091 0.78 +0.2 50,952 + GFF4091 0.78 -0.0 50,954 + GFF4091 0.78 +0.3 50,954 + GFF4091 0.78 +0.0 50,954 + GFF4091 0.78 -0.3 50,955 - GFF4091 0.78 -0.3 50,955 - GFF4091 0.78 +0.1 51,120 + GFF4091 0.85 +0.4 51,120 + GFF4091 0.85 -0.1 51,545 - +0.5 51,547 - +0.4 51,557 + GFF4092 0.10 -0.1 51,620 + GFF4092 0.24 -0.6 51,621 - GFF4092 0.24 -0.2 51,626 + GFF4092 0.25 -2.4 51,972 + -0.0 51,973 - +0.6 51,995 + +0.4 52,413 - +0.2 52,455 - +0.0 52,717 + GFF4093 0.41 +0.2 52,718 - GFF4093 0.41 +0.2 52,978 + GFF4093 0.72 -1.1
Or see this region's nucleotide sequence