Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3969 and GFF3970 are separated by 77 nucleotides GFF3970 and GFF4032 are separated by 226 nucleotides GFF4032 and GFF3971 are separated by 90 nucleotides
GFF3969 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 246,480 to 247,550
GFF3969
GFF3970 - L,D-transpeptidase YbiS, at 247,628 to 248,557
GFF3970
GFF4032 - tRNA-Asn-GTT, at 248,784 to 248,859
GFF4032
GFF3971 - FIG01069516: hypothetical protein, at 248,950 to 250,476
GFF3971
Position (kb) 247
248
249 Strain fitness (log2 ratio) -1
0
1 at 246.635 kb on + strand, within GFF3969 at 246.853 kb on + strand, within GFF3969 at 246.854 kb on - strand, within GFF3969 at 246.858 kb on - strand, within GFF3969 at 246.860 kb on + strand, within GFF3969 at 246.861 kb on - strand, within GFF3969 at 247.253 kb on - strand, within GFF3969 at 247.402 kb on - strand, within GFF3969 at 247.424 kb on - strand, within GFF3969 at 247.514 kb on + strand at 247.514 kb on + strand at 247.625 kb on - strand at 247.626 kb on + strand at 247.692 kb on + strand at 247.692 kb on + strand at 247.693 kb on - strand at 247.776 kb on + strand, within GFF3970 at 247.817 kb on - strand, within GFF3970 at 247.919 kb on - strand, within GFF3970 at 247.949 kb on + strand, within GFF3970 at 247.986 kb on + strand, within GFF3970 at 247.990 kb on + strand, within GFF3970 at 248.105 kb on - strand, within GFF3970 at 248.173 kb on - strand, within GFF3970 at 248.173 kb on - strand, within GFF3970 at 248.174 kb on + strand, within GFF3970 at 248.174 kb on + strand, within GFF3970 at 248.175 kb on - strand, within GFF3970 at 248.176 kb on + strand, within GFF3970 at 248.188 kb on - strand, within GFF3970 at 248.190 kb on - strand, within GFF3970 at 248.249 kb on - strand, within GFF3970 at 248.479 kb on + strand at 248.560 kb on - strand at 248.560 kb on - strand at 248.594 kb on + strand at 249.041 kb on + strand at 249.157 kb on - strand, within GFF3971 at 249.278 kb on + strand, within GFF3971 at 249.279 kb on - strand, within GFF3971 at 249.279 kb on - strand, within GFF3971 at 249.312 kb on + strand, within GFF3971 at 249.316 kb on - strand, within GFF3971 at 249.434 kb on - strand, within GFF3971 at 249.454 kb on - strand, within GFF3971 at 249.485 kb on + strand, within GFF3971
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 246,635 + GFF3969 0.14 +0.5 246,853 + GFF3969 0.35 -0.2 246,854 - GFF3969 0.35 +0.8 246,858 - GFF3969 0.35 -0.5 246,860 + GFF3969 0.35 -0.1 246,861 - GFF3969 0.36 +0.1 247,253 - GFF3969 0.72 -0.4 247,402 - GFF3969 0.86 +0.4 247,424 - GFF3969 0.88 -0.4 247,514 + +0.7 247,514 + -0.2 247,625 - +1.2 247,626 + +0.1 247,692 + -0.0 247,692 + +0.1 247,693 - +0.3 247,776 + GFF3970 0.16 +0.5 247,817 - GFF3970 0.20 +0.7 247,919 - GFF3970 0.31 +0.3 247,949 + GFF3970 0.35 -0.5 247,986 + GFF3970 0.38 -0.6 247,990 + GFF3970 0.39 +0.1 248,105 - GFF3970 0.51 -0.2 248,173 - GFF3970 0.59 -0.5 248,173 - GFF3970 0.59 +1.3 248,174 + GFF3970 0.59 -0.2 248,174 + GFF3970 0.59 -1.4 248,175 - GFF3970 0.59 -1.0 248,176 + GFF3970 0.59 -0.6 248,188 - GFF3970 0.60 -1.0 248,190 - GFF3970 0.60 +0.1 248,249 - GFF3970 0.67 +0.3 248,479 + +0.9 248,560 - +0.6 248,560 - +0.4 248,594 + -0.1 249,041 + +0.6 249,157 - GFF3971 0.14 -1.0 249,278 + GFF3971 0.21 +0.7 249,279 - GFF3971 0.22 -0.1 249,279 - GFF3971 0.22 +0.2 249,312 + GFF3971 0.24 +1.1 249,316 - GFF3971 0.24 +0.2 249,434 - GFF3971 0.32 -0.0 249,454 - GFF3971 0.33 +0.0 249,485 + GFF3971 0.35 -0.0
Or see this region's nucleotide sequence