Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3964 and GFF3965 are separated by 8 nucleotides GFF3965 and GFF3966 overlap by 4 nucleotides GFF3966 and GFF3967 overlap by 4 nucleotides GFF3967 and GFF3968 overlap by 4 nucleotides
GFF3964 - Transmembrane component CbiQ of energizing module of cobalt ECF transporter, at 242,153 to 242,830
GFF3964
GFF3965 - ATPase component CbiO of energizing module of cobalt ECF transporter, at 242,839 to 243,654
GFF3965
GFF3966 - Cobyric acid synthase (EC 6.3.5.10), at 243,651 to 245,171
GFF3966
GFF3967 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 245,168 to 245,713
GFF3967
GFF3968 - Cobalamin synthase (EC 2.7.8.26), at 245,710 to 246,453
GFF3968
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -2
-1
0
1 at 242.828 kb on + strand at 242.835 kb on + strand at 242.838 kb on + strand at 242.839 kb on - strand at 242.889 kb on + strand at 242.897 kb on + strand at 242.970 kb on + strand, within GFF3965 at 243.141 kb on + strand, within GFF3965 at 243.307 kb on + strand, within GFF3965 at 243.311 kb on + strand, within GFF3965 at 243.312 kb on - strand, within GFF3965 at 243.312 kb on - strand, within GFF3965 at 243.312 kb on - strand, within GFF3965 at 243.408 kb on + strand, within GFF3965 at 243.409 kb on - strand, within GFF3965 at 243.409 kb on - strand, within GFF3965 at 243.432 kb on + strand, within GFF3965 at 243.457 kb on + strand, within GFF3965 at 243.461 kb on + strand, within GFF3965 at 243.665 kb on + strand at 243.719 kb on - strand at 243.749 kb on + strand at 243.773 kb on + strand at 243.783 kb on - strand at 243.969 kb on + strand, within GFF3966 at 243.972 kb on - strand, within GFF3966 at 244.005 kb on + strand, within GFF3966 at 244.006 kb on - strand, within GFF3966 at 244.027 kb on - strand, within GFF3966 at 244.034 kb on + strand, within GFF3966 at 244.034 kb on + strand, within GFF3966 at 244.034 kb on + strand, within GFF3966 at 244.219 kb on + strand, within GFF3966 at 244.233 kb on - strand, within GFF3966 at 244.266 kb on + strand, within GFF3966 at 244.267 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.454 kb on + strand, within GFF3966 at 244.491 kb on + strand, within GFF3966 at 244.728 kb on - strand, within GFF3966 at 245.253 kb on - strand, within GFF3967 at 245.253 kb on - strand, within GFF3967 at 245.254 kb on + strand, within GFF3967 at 245.309 kb on - strand, within GFF3967 at 245.413 kb on + strand, within GFF3967 at 245.413 kb on + strand, within GFF3967 at 245.414 kb on - strand, within GFF3967 at 245.559 kb on + strand, within GFF3967 at 245.849 kb on + strand, within GFF3968
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 242,828 + +0.5 242,835 + -1.1 242,838 + +0.2 242,839 - -0.2 242,889 + +0.5 242,897 + +0.7 242,970 + GFF3965 0.16 -1.8 243,141 + GFF3965 0.37 +0.9 243,307 + GFF3965 0.57 +0.8 243,311 + GFF3965 0.58 +0.5 243,312 - GFF3965 0.58 +0.3 243,312 - GFF3965 0.58 +0.4 243,312 - GFF3965 0.58 +1.0 243,408 + GFF3965 0.70 +0.7 243,409 - GFF3965 0.70 -0.2 243,409 - GFF3965 0.70 +0.2 243,432 + GFF3965 0.73 -0.2 243,457 + GFF3965 0.76 +0.3 243,461 + GFF3965 0.76 -0.2 243,665 + +0.5 243,719 - +0.2 243,749 + +0.1 243,773 + -0.1 243,783 - -1.0 243,969 + GFF3966 0.21 +0.0 243,972 - GFF3966 0.21 -0.7 244,005 + GFF3966 0.23 +0.1 244,006 - GFF3966 0.23 +0.1 244,027 - GFF3966 0.25 -0.6 244,034 + GFF3966 0.25 -0.9 244,034 + GFF3966 0.25 +0.1 244,034 + GFF3966 0.25 -0.1 244,219 + GFF3966 0.37 +0.8 244,233 - GFF3966 0.38 +0.4 244,266 + GFF3966 0.40 +0.1 244,267 - GFF3966 0.40 -0.4 244,434 - GFF3966 0.51 -1.2 244,434 - GFF3966 0.51 -0.2 244,434 - GFF3966 0.51 -0.5 244,434 - GFF3966 0.51 -0.5 244,454 + GFF3966 0.53 -0.1 244,491 + GFF3966 0.55 -0.0 244,728 - GFF3966 0.71 -0.8 245,253 - GFF3967 0.16 +0.1 245,253 - GFF3967 0.16 -0.3 245,254 + GFF3967 0.16 +0.2 245,309 - GFF3967 0.26 +0.5 245,413 + GFF3967 0.45 +0.1 245,413 + GFF3967 0.45 +0.6 245,414 - GFF3967 0.45 +0.8 245,559 + GFF3967 0.72 +0.1 245,849 + GFF3968 0.19 -0.6
Or see this region's nucleotide sequence