Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3959 and GFF3960 are separated by 2 nucleotides GFF3960 and GFF3961 overlap by 4 nucleotides GFF3961 and GFF3962 overlap by 4 nucleotides GFF3962 and GFF3963 are separated by 1 nucleotides
GFF3959 - Cobalt-precorrin-6x reductase (EC 1.3.1.54), at 238,851 to 239,642
GFF3959
GFF3960 - Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3), at 239,645 to 240,439
GFF3960
GFF3961 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 240,436 to 241,149
GFF3961
GFF3962 - Substrate-specific component CbiM of cobalt ECF transporter, at 241,146 to 241,883
GFF3962
GFF3963 - Additional substrate-specific component CbiN of cobalt ECF transporter, at 241,885 to 242,166
GFF3963
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1 at 239.685 kb on - strand at 240.003 kb on - strand, within GFF3960 at 240.003 kb on - strand, within GFF3960 at 240.107 kb on + strand, within GFF3960 at 240.108 kb on - strand, within GFF3960 at 240.125 kb on - strand, within GFF3960 at 240.459 kb on - strand at 240.611 kb on + strand, within GFF3961 at 240.612 kb on - strand, within GFF3961 at 240.724 kb on - strand, within GFF3961 at 240.864 kb on - strand, within GFF3961 at 240.927 kb on - strand, within GFF3961 at 241.125 kb on + strand at 241.126 kb on - strand at 241.139 kb on - strand at 241.288 kb on + strand, within GFF3962 at 241.297 kb on + strand, within GFF3962 at 241.466 kb on + strand, within GFF3962 at 242.019 kb on + strand, within GFF3963 at 242.019 kb on + strand, within GFF3963 at 242.020 kb on - strand, within GFF3963 at 242.020 kb on - strand, within GFF3963 at 242.039 kb on + strand, within GFF3963
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 239,685 - -0.5 240,003 - GFF3960 0.45 +0.3 240,003 - GFF3960 0.45 +0.0 240,107 + GFF3960 0.58 -0.0 240,108 - GFF3960 0.58 -0.2 240,125 - GFF3960 0.60 -0.0 240,459 - -0.0 240,611 + GFF3961 0.25 +0.3 240,612 - GFF3961 0.25 -0.2 240,724 - GFF3961 0.40 -1.4 240,864 - GFF3961 0.60 -0.8 240,927 - GFF3961 0.69 +0.1 241,125 + +0.7 241,126 - -0.2 241,139 - +0.2 241,288 + GFF3962 0.19 +0.7 241,297 + GFF3962 0.20 -0.1 241,466 + GFF3962 0.43 +0.2 242,019 + GFF3963 0.48 +0.4 242,019 + GFF3963 0.48 -0.3 242,020 - GFF3963 0.48 -2.5 242,020 - GFF3963 0.48 +1.2 242,039 + GFF3963 0.55 +0.2
Or see this region's nucleotide sequence