Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3934 and GFF3935 overlap by 4 nucleotides GFF3935 and GFF3936 are separated by 9 nucleotides GFF3936 and GFF3937 are separated by 3 nucleotides GFF3937 and GFF3938 overlap by 4 nucleotides
GFF3934 - CoA-acylating propionaldehyde dehydrogenase, at 217,238 to 218,632
GFF3934
GFF3935 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 218,629 to 219,639
GFF3935
GFF3936 - Propanediol utilization polyhedral body protein PduN, at 219,649 to 219,924
GFF3936
GFF3937 - Propanediol utilization protein PduM, at 219,928 to 220,419
GFF3937
GFF3938 - Ethanolamine utilization protein similar to PduL, at 220,416 to 221,048
GFF3938
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1 at 217.858 kb on + strand, within GFF3934 at 217.992 kb on - strand, within GFF3934 at 218.158 kb on + strand, within GFF3934 at 218.159 kb on - strand, within GFF3934 at 218.186 kb on - strand, within GFF3934 at 218.312 kb on + strand, within GFF3934 at 218.446 kb on + strand, within GFF3934 at 218.466 kb on - strand, within GFF3934 at 218.487 kb on - strand, within GFF3934 at 218.580 kb on - strand at 218.726 kb on - strand at 219.100 kb on - strand, within GFF3935 at 219.184 kb on - strand, within GFF3935 at 219.205 kb on + strand, within GFF3935 at 219.309 kb on + strand, within GFF3935 at 219.390 kb on - strand, within GFF3935 at 219.627 kb on + strand at 219.663 kb on + strand at 219.667 kb on + strand at 219.875 kb on - strand, within GFF3936 at 219.940 kb on - strand at 219.940 kb on - strand at 220.628 kb on + strand, within GFF3938 at 220.628 kb on + strand, within GFF3938 at 220.629 kb on - strand, within GFF3938
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 217,858 + GFF3934 0.44 +0.9 217,992 - GFF3934 0.54 +0.3 218,158 + GFF3934 0.66 +0.3 218,159 - GFF3934 0.66 -0.3 218,186 - GFF3934 0.68 -0.0 218,312 + GFF3934 0.77 -0.1 218,446 + GFF3934 0.87 +0.3 218,466 - GFF3934 0.88 -0.2 218,487 - GFF3934 0.90 +0.0 218,580 - -0.5 218,726 - +0.4 219,100 - GFF3935 0.47 -0.8 219,184 - GFF3935 0.55 -1.3 219,205 + GFF3935 0.57 -0.3 219,309 + GFF3935 0.67 -0.0 219,390 - GFF3935 0.75 -0.2 219,627 + -0.1 219,663 + +0.5 219,667 + -0.6 219,875 - GFF3936 0.82 -0.5 219,940 - -0.4 219,940 - +0.2 220,628 + GFF3938 0.33 -0.2 220,628 + GFF3938 0.33 -0.7 220,629 - GFF3938 0.34 +0.4
Or see this region's nucleotide sequence