Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3908 and GFF3909 overlap by 1 nucleotides GFF3909 and GFF3910 overlap by 1 nucleotides GFF3910 and GFF3911 overlap by 4 nucleotides
GFF3908 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 189,465 to 190,202
GFF3908
GFF3909 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 190,202 to 190,792
GFF3909
GFF3910 - Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 190,792 to 191,859
GFF3910
GFF3911 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 191,856 to 192,935
GFF3911
Position (kb) 190
191
192 Strain fitness (log2 ratio) -1
0
1
2 at 189.808 kb on - strand, within GFF3908 at 190.186 kb on - strand at 190.203 kb on + strand at 190.268 kb on + strand, within GFF3909 at 190.269 kb on - strand, within GFF3909 at 190.586 kb on - strand, within GFF3909 at 190.593 kb on + strand, within GFF3909 at 190.595 kb on - strand, within GFF3909 at 190.754 kb on + strand at 191.005 kb on - strand, within GFF3910 at 191.016 kb on + strand, within GFF3910 at 191.164 kb on + strand, within GFF3910 at 191.187 kb on - strand, within GFF3910 at 191.187 kb on - strand, within GFF3910 at 191.187 kb on - strand, within GFF3910 at 191.697 kb on + strand, within GFF3910 at 191.938 kb on - strand at 192.029 kb on + strand, within GFF3911 at 192.029 kb on + strand, within GFF3911 at 192.216 kb on + strand, within GFF3911 at 192.367 kb on + strand, within GFF3911 at 192.368 kb on - strand, within GFF3911 at 192.368 kb on - strand, within GFF3911 at 192.441 kb on - strand, within GFF3911 at 192.441 kb on - strand, within GFF3911 at 192.441 kb on - strand, within GFF3911 at 192.467 kb on + strand, within GFF3911 at 192.562 kb on - strand, within GFF3911 at 192.590 kb on - strand, within GFF3911 at 192.770 kb on + strand, within GFF3911
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 189,808 - GFF3908 0.46 -0.0 190,186 - +0.2 190,203 + +0.1 190,268 + GFF3909 0.11 +1.1 190,269 - GFF3909 0.11 -0.8 190,586 - GFF3909 0.65 -0.2 190,593 + GFF3909 0.66 -0.2 190,595 - GFF3909 0.66 -0.2 190,754 + -0.1 191,005 - GFF3910 0.20 +0.1 191,016 + GFF3910 0.21 +2.0 191,164 + GFF3910 0.35 +0.0 191,187 - GFF3910 0.37 -0.1 191,187 - GFF3910 0.37 +0.2 191,187 - GFF3910 0.37 +0.5 191,697 + GFF3910 0.85 -0.2 191,938 - +0.3 192,029 + GFF3911 0.16 +0.9 192,029 + GFF3911 0.16 -0.9 192,216 + GFF3911 0.33 -0.4 192,367 + GFF3911 0.47 -0.0 192,368 - GFF3911 0.47 +0.3 192,368 - GFF3911 0.47 -0.2 192,441 - GFF3911 0.54 -0.8 192,441 - GFF3911 0.54 +0.4 192,441 - GFF3911 0.54 +0.5 192,467 + GFF3911 0.57 -0.3 192,562 - GFF3911 0.65 -0.1 192,590 - GFF3911 0.68 -0.5 192,770 + GFF3911 0.85 -0.3
Or see this region's nucleotide sequence