Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3819

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3818 and GFF3819 are separated by 222 nucleotidesGFF3819 and GFF3820 overlap by 4 nucleotidesGFF3820 and GFF3821 are separated by 46 nucleotides GFF3818 - HTH-type transcriptional regulator mlrA, at 87,753 to 88,484 GFF3818 GFF3819 - Autolysis histidine kinase LytS, at 88,707 to 90,392 GFF3819 GFF3820 - Two-component response-regulatory protein YehT, at 90,389 to 91,108 GFF3820 GFF3821 - FIG00638377: hypothetical protein, at 91,155 to 91,622 GFF3821 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 87.723 kb on - strandat 87.844 kb on - strand, within GFF3818at 87.850 kb on - strand, within GFF3818at 87.963 kb on - strand, within GFF3818at 87.971 kb on + strand, within GFF3818at 88.037 kb on + strand, within GFF3818at 88.039 kb on + strand, within GFF3818at 88.039 kb on + strand, within GFF3818at 88.039 kb on + strand, within GFF3818at 88.039 kb on + strand, within GFF3818at 88.040 kb on - strand, within GFF3818at 88.101 kb on + strand, within GFF3818at 88.102 kb on - strand, within GFF3818at 88.250 kb on + strand, within GFF3818at 88.251 kb on - strand, within GFF3818at 88.251 kb on - strand, within GFF3818at 88.358 kb on + strand, within GFF3818at 88.395 kb on + strand, within GFF3818at 88.475 kb on - strandat 88.515 kb on + strandat 88.534 kb on - strandat 88.602 kb on + strandat 88.654 kb on + strandat 88.710 kb on + strandat 88.710 kb on + strandat 88.845 kb on + strandat 89.009 kb on + strand, within GFF3819at 89.145 kb on - strand, within GFF3819at 89.226 kb on - strand, within GFF3819at 89.317 kb on - strand, within GFF3819at 89.402 kb on + strand, within GFF3819at 89.422 kb on + strand, within GFF3819at 89.423 kb on - strand, within GFF3819at 89.537 kb on + strand, within GFF3819at 89.537 kb on + strand, within GFF3819at 89.537 kb on + strand, within GFF3819at 89.685 kb on - strand, within GFF3819at 89.685 kb on - strand, within GFF3819at 89.724 kb on - strand, within GFF3819at 89.784 kb on + strand, within GFF3819at 89.874 kb on - strand, within GFF3819at 90.004 kb on + strand, within GFF3819at 90.134 kb on + strand, within GFF3819at 90.216 kb on - strand, within GFF3819at 90.257 kb on + strandat 90.324 kb on - strandat 90.360 kb on - strandat 90.365 kb on - strandat 90.520 kb on + strand, within GFF3820at 90.520 kb on + strand, within GFF3820at 90.724 kb on - strand, within GFF3820at 90.866 kb on - strand, within GFF3820at 90.982 kb on + strand, within GFF3820at 91.205 kb on + strand, within GFF3821at 91.205 kb on + strand, within GFF3821

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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87,723 - +0.2
87,844 - GFF3818 0.12 +0.6
87,850 - GFF3818 0.13 -0.1
87,963 - GFF3818 0.29 -0.6
87,971 + GFF3818 0.30 +0.4
88,037 + GFF3818 0.39 -0.0
88,039 + GFF3818 0.39 +1.1
88,039 + GFF3818 0.39 -0.1
88,039 + GFF3818 0.39 +0.1
88,039 + GFF3818 0.39 +0.1
88,040 - GFF3818 0.39 +0.0
88,101 + GFF3818 0.48 +0.5
88,102 - GFF3818 0.48 +0.3
88,250 + GFF3818 0.68 +0.3
88,251 - GFF3818 0.68 +0.8
88,251 - GFF3818 0.68 -0.9
88,358 + GFF3818 0.83 +0.8
88,395 + GFF3818 0.88 +0.2
88,475 - +0.7
88,515 + -0.9
88,534 - -0.8
88,602 + +0.2
88,654 + +0.2
88,710 + -0.3
88,710 + -0.1
88,845 + +0.3
89,009 + GFF3819 0.18 -0.2
89,145 - GFF3819 0.26 -0.6
89,226 - GFF3819 0.31 -2.6
89,317 - GFF3819 0.36 -0.1
89,402 + GFF3819 0.41 -0.0
89,422 + GFF3819 0.42 -0.4
89,423 - GFF3819 0.42 -0.3
89,537 + GFF3819 0.49 -0.2
89,537 + GFF3819 0.49 -1.8
89,537 + GFF3819 0.49 -0.7
89,685 - GFF3819 0.58 +0.7
89,685 - GFF3819 0.58 -0.3
89,724 - GFF3819 0.60 +0.6
89,784 + GFF3819 0.64 -0.4
89,874 - GFF3819 0.69 -0.8
90,004 + GFF3819 0.77 -0.4
90,134 + GFF3819 0.85 +0.4
90,216 - GFF3819 0.90 -0.2
90,257 + +0.5
90,324 - -0.7
90,360 - +0.3
90,365 - -0.8
90,520 + GFF3820 0.18 -0.2
90,520 + GFF3820 0.18 +0.3
90,724 - GFF3820 0.47 -0.1
90,866 - GFF3820 0.66 -0.2
90,982 + GFF3820 0.82 +0.5
91,205 + GFF3821 0.11 +0.3
91,205 + GFF3821 0.11 +0.1

Or see this region's nucleotide sequence