Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3802

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3800 and GFF3801 are separated by 15 nucleotidesGFF3801 and GFF3802 are separated by 8 nucleotidesGFF3802 and GFF3803 are separated by 14 nucleotides GFF3800 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 69,466 to 70,503 GFF3800 GFF3801 - Fumarylacetoacetase (EC 3.7.1.2), at 70,519 to 71,220 GFF3801 GFF3802 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 71,229 to 71,873 GFF3802 GFF3803 - Putative n-hydroxybenzoate hydroxylase, at 71,888 to 73,081 GFF3803 Position (kb) 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 70.308 kb on + strand, within GFF3800at 70.309 kb on - strand, within GFF3800at 70.309 kb on - strand, within GFF3800at 70.309 kb on - strand, within GFF3800at 70.309 kb on - strand, within GFF3800at 70.312 kb on + strand, within GFF3800at 70.312 kb on + strand, within GFF3800at 70.501 kb on + strandat 70.528 kb on + strandat 70.621 kb on + strand, within GFF3801at 70.622 kb on - strand, within GFF3801at 70.760 kb on - strand, within GFF3801at 70.765 kb on + strand, within GFF3801at 70.766 kb on - strand, within GFF3801at 70.794 kb on + strand, within GFF3801at 70.835 kb on - strand, within GFF3801at 70.959 kb on - strand, within GFF3801at 70.981 kb on - strand, within GFF3801at 70.999 kb on - strand, within GFF3801at 71.080 kb on + strand, within GFF3801at 71.184 kb on - strandat 71.184 kb on - strandat 71.272 kb on + strandat 71.277 kb on - strandat 71.538 kb on - strand, within GFF3802at 71.539 kb on + strand, within GFF3802at 71.970 kb on + strandat 72.112 kb on + strand, within GFF3803at 72.113 kb on - strand, within GFF3803at 72.217 kb on + strand, within GFF3803at 72.218 kb on - strand, within GFF3803at 72.218 kb on - strand, within GFF3803at 72.379 kb on + strand, within GFF3803at 72.435 kb on + strand, within GFF3803at 72.558 kb on - strand, within GFF3803at 72.788 kb on + strand, within GFF3803at 72.789 kb on - strand, within GFF3803at 72.790 kb on + strand, within GFF3803at 72.790 kb on + strand, within GFF3803at 72.790 kb on + strand, within GFF3803at 72.790 kb on + strand, within GFF3803

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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70,308 + GFF3800 0.81 +0.8
70,309 - GFF3800 0.81 +1.2
70,309 - GFF3800 0.81 +0.1
70,309 - GFF3800 0.81 -0.5
70,309 - GFF3800 0.81 +0.4
70,312 + GFF3800 0.82 +0.2
70,312 + GFF3800 0.82 +1.5
70,501 + -0.1
70,528 + +0.2
70,621 + GFF3801 0.15 +0.1
70,622 - GFF3801 0.15 +0.1
70,760 - GFF3801 0.34 -0.2
70,765 + GFF3801 0.35 -0.9
70,766 - GFF3801 0.35 +0.0
70,794 + GFF3801 0.39 +0.1
70,835 - GFF3801 0.45 -0.3
70,959 - GFF3801 0.63 -0.4
70,981 - GFF3801 0.66 +0.8
70,999 - GFF3801 0.68 +0.4
71,080 + GFF3801 0.80 -0.4
71,184 - +0.0
71,184 - -0.2
71,272 + +0.0
71,277 - -0.2
71,538 - GFF3802 0.48 +0.3
71,539 + GFF3802 0.48 +0.6
71,970 + -0.2
72,112 + GFF3803 0.19 +2.1
72,113 - GFF3803 0.19 -2.7
72,217 + GFF3803 0.28 +0.7
72,218 - GFF3803 0.28 -0.8
72,218 - GFF3803 0.28 +0.0
72,379 + GFF3803 0.41 +0.0
72,435 + GFF3803 0.46 -1.1
72,558 - GFF3803 0.56 -0.4
72,788 + GFF3803 0.75 -0.0
72,789 - GFF3803 0.75 -0.1
72,790 + GFF3803 0.76 -0.0
72,790 + GFF3803 0.76 +0.3
72,790 + GFF3803 0.76 +1.0
72,790 + GFF3803 0.76 -0.3

Or see this region's nucleotide sequence