Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3708 and GFF3709 are separated by 31 nucleotides GFF3709 and GFF3710 are separated by 85 nucleotides GFF3710 and GFF3711 are separated by 42 nucleotides
GFF3708 - Cell filamentation protein fic, at 13,985 to 14,587
GFF3708
GFF3709 - Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 14,619 to 15,182
GFF3709
GFF3710 - Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), at 15,268 to 16,485
GFF3710
GFF3711 - FIG00638035: hypothetical protein, at 16,528 to 18,615
GFF3711
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1 at 14.364 kb on - strand, within GFF3708 at 14.364 kb on - strand, within GFF3708 at 14.366 kb on + strand, within GFF3708 at 14.366 kb on + strand, within GFF3708 at 14.367 kb on - strand, within GFF3708 at 14.367 kb on - strand, within GFF3708 at 14.378 kb on - strand, within GFF3708 at 14.476 kb on + strand, within GFF3708 at 14.477 kb on - strand, within GFF3708 at 14.640 kb on + strand at 14.651 kb on + strand at 14.946 kb on - strand, within GFF3709 at 15.329 kb on - strand at 15.360 kb on + strand at 15.397 kb on + strand, within GFF3710 at 15.397 kb on + strand, within GFF3710 at 15.398 kb on - strand, within GFF3710 at 15.495 kb on + strand, within GFF3710 at 15.579 kb on + strand, within GFF3710 at 15.771 kb on + strand, within GFF3710 at 15.988 kb on + strand, within GFF3710 at 15.990 kb on + strand, within GFF3710 at 15.990 kb on + strand, within GFF3710 at 15.990 kb on + strand, within GFF3710 at 15.991 kb on - strand, within GFF3710 at 16.100 kb on + strand, within GFF3710 at 16.100 kb on + strand, within GFF3710 at 16.101 kb on - strand, within GFF3710 at 16.168 kb on - strand, within GFF3710 at 16.174 kb on - strand, within GFF3710 at 16.174 kb on - strand, within GFF3710 at 16.206 kb on + strand, within GFF3710 at 16.207 kb on - strand, within GFF3710 at 16.315 kb on + strand, within GFF3710 at 16.342 kb on + strand, within GFF3710 at 16.529 kb on + strand at 16.539 kb on + strand at 16.702 kb on - strand at 16.733 kb on + strand at 16.860 kb on + strand, within GFF3711 at 16.882 kb on + strand, within GFF3711 at 16.882 kb on + strand, within GFF3711 at 16.902 kb on - strand, within GFF3711 at 16.959 kb on + strand, within GFF3711 at 17.034 kb on + strand, within GFF3711 at 17.073 kb on + strand, within GFF3711 at 17.074 kb on - strand, within GFF3711 at 17.194 kb on + strand, within GFF3711 at 17.195 kb on - strand, within GFF3711 at 17.208 kb on - strand, within GFF3711 at 17.208 kb on - strand, within GFF3711 at 17.208 kb on - strand, within GFF3711 at 17.320 kb on - strand, within GFF3711 at 17.323 kb on + strand, within GFF3711 at 17.323 kb on + strand, within GFF3711 at 17.323 kb on + strand, within GFF3711 at 17.324 kb on - strand, within GFF3711 at 17.324 kb on - strand, within GFF3711 at 17.324 kb on - strand, within GFF3711 at 17.324 kb on - strand, within GFF3711 at 17.385 kb on + strand, within GFF3711
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 14,364 - GFF3708 0.63 +0.1 14,364 - GFF3708 0.63 +0.1 14,366 + GFF3708 0.63 -0.1 14,366 + GFF3708 0.63 -0.1 14,367 - GFF3708 0.63 +0.4 14,367 - GFF3708 0.63 -0.4 14,378 - GFF3708 0.65 +0.2 14,476 + GFF3708 0.81 -0.2 14,477 - GFF3708 0.82 +0.0 14,640 + +0.3 14,651 + +0.0 14,946 - GFF3709 0.58 +0.1 15,329 - -0.3 15,360 + -0.4 15,397 + GFF3710 0.11 +0.4 15,397 + GFF3710 0.11 +0.1 15,398 - GFF3710 0.11 +0.1 15,495 + GFF3710 0.19 -0.7 15,579 + GFF3710 0.26 +0.1 15,771 + GFF3710 0.41 +0.1 15,988 + GFF3710 0.59 +1.2 15,990 + GFF3710 0.59 +1.6 15,990 + GFF3710 0.59 +0.1 15,990 + GFF3710 0.59 +0.1 15,991 - GFF3710 0.59 +0.1 16,100 + GFF3710 0.68 -0.2 16,100 + GFF3710 0.68 +0.2 16,101 - GFF3710 0.68 -0.6 16,168 - GFF3710 0.74 +0.5 16,174 - GFF3710 0.74 +0.4 16,174 - GFF3710 0.74 +0.6 16,206 + GFF3710 0.77 +0.6 16,207 - GFF3710 0.77 -0.3 16,315 + GFF3710 0.86 -0.0 16,342 + GFF3710 0.88 +0.1 16,529 + +0.2 16,539 + -0.4 16,702 - +0.2 16,733 + +0.0 16,860 + GFF3711 0.16 +0.1 16,882 + GFF3711 0.17 -0.6 16,882 + GFF3711 0.17 -0.3 16,902 - GFF3711 0.18 -0.4 16,959 + GFF3711 0.21 -0.2 17,034 + GFF3711 0.24 +0.1 17,073 + GFF3711 0.26 -0.2 17,074 - GFF3711 0.26 +0.7 17,194 + GFF3711 0.32 +0.4 17,195 - GFF3711 0.32 +0.1 17,208 - GFF3711 0.33 +0.1 17,208 - GFF3711 0.33 +0.2 17,208 - GFF3711 0.33 -0.5 17,320 - GFF3711 0.38 -0.3 17,323 + GFF3711 0.38 +0.0 17,323 + GFF3711 0.38 +0.4 17,323 + GFF3711 0.38 -0.3 17,324 - GFF3711 0.38 +0.0 17,324 - GFF3711 0.38 +0.1 17,324 - GFF3711 0.38 -0.9 17,324 - GFF3711 0.38 -0.0 17,385 + GFF3711 0.41 +0.6
Or see this region's nucleotide sequence